Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm6206-201ENSMUST00000133472 2199 ntBASIC28.89■■■□□ 2.22
Scn11aQ9R053 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC28.89■■■□□ 2.22
Scn11aQ9R053 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Scn11aQ9R053 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC28.88■■■□□ 2.21
Scn11aQ9R053 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Scn11aQ9R053 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC28.87■■■□□ 2.21
Scn11aQ9R053 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
Scn11aQ9R053 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC28.85■■■□□ 2.21
Scn11aQ9R053 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Scn11aQ9R053 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC28.84■■■□□ 2.21
Scn11aQ9R053 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Scn11aQ9R053 Gm9905-201ENSMUST00000065740 1845 ntBASIC28.84■■■□□ 2.21
Scn11aQ9R053 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Scn11aQ9R053 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Scn11aQ9R053 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
Scn11aQ9R053 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Scn11aQ9R053 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC28.81■■■□□ 2.2
Scn11aQ9R053 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Scn11aQ9R053 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC28.81■■■□□ 2.2
Scn11aQ9R053 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC28.81■■■□□ 2.2
Scn11aQ9R053 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC28.8■■■□□ 2.2
Scn11aQ9R053 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC28.79■■■□□ 2.2
Scn11aQ9R053 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
Scn11aQ9R053 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Scn11aQ9R053 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Scn11aQ9R053 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC28.75■■■□□ 2.19
Scn11aQ9R053 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Scn11aQ9R053 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
Scn11aQ9R053 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC28.75■■■□□ 2.19
Scn11aQ9R053 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC28.74■■■□□ 2.19
Scn11aQ9R053 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
Scn11aQ9R053 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC28.74■■■□□ 2.19
Scn11aQ9R053 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC28.73■■■□□ 2.19
Scn11aQ9R053 Gm37136-201ENSMUST00000194368 194 ntBASIC28.73■■■□□ 2.19
Scn11aQ9R053 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Scn11aQ9R053 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Scn11aQ9R053 Gm6311-201ENSMUST00000073790 878 ntBASIC28.7■■■□□ 2.19
Scn11aQ9R053 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Scn11aQ9R053 Gm45364-201ENSMUST00000210883 159 ntBASIC28.7■■■□□ 2.18
Scn11aQ9R053 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Scn11aQ9R053 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
Scn11aQ9R053 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
Scn11aQ9R053 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Scn11aQ9R053 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Scn11aQ9R053 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC28.67■■■□□ 2.18
Scn11aQ9R053 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Scn11aQ9R053 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Scn11aQ9R053 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Scn11aQ9R053 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Scn11aQ9R053 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC28.66■■■□□ 2.18
Scn11aQ9R053 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
Scn11aQ9R053 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Scn11aQ9R053 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC28.65■■■□□ 2.18
Scn11aQ9R053 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Scn11aQ9R053 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Scn11aQ9R053 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC28.64■■■□□ 2.18
Scn11aQ9R053 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Scn11aQ9R053 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Scn11aQ9R053 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Scn11aQ9R053 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Scn11aQ9R053 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC28.63■■■□□ 2.17
Scn11aQ9R053 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
Scn11aQ9R053 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC28.62■■■□□ 2.17
Scn11aQ9R053 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Scn11aQ9R053 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
Scn11aQ9R053 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Scn11aQ9R053 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Scn11aQ9R053 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Scn11aQ9R053 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Scn11aQ9R053 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
Scn11aQ9R053 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Scn11aQ9R053 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Scn11aQ9R053 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Scn11aQ9R053 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Scn11aQ9R053 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Scn11aQ9R053 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Scn11aQ9R053 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC28.55■■■□□ 2.16
Scn11aQ9R053 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Scn11aQ9R053 Pkd1-207ENSMUST00000228550 1050 ntBASIC28.55■■■□□ 2.16
Scn11aQ9R053 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC28.54■■■□□ 2.16
Scn11aQ9R053 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
Scn11aQ9R053 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC28.54■■■□□ 2.16
Scn11aQ9R053 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Scn11aQ9R053 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
Scn11aQ9R053 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Scn11aQ9R053 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Scn11aQ9R053 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.52■■■□□ 2.16
Scn11aQ9R053 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Scn11aQ9R053 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Scn11aQ9R053 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.16
Scn11aQ9R053 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Scn11aQ9R053 AC154454.1-201ENSMUST00000225253 216 ntBASIC28.51■■■□□ 2.15
Scn11aQ9R053 Amer2-203ENSMUST00000225247 2662 ntBASIC28.51■■■□□ 2.15
Scn11aQ9R053 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Scn11aQ9R053 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC28.5■■■□□ 2.15
Scn11aQ9R053 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC28.49■■■□□ 2.15
Scn11aQ9R053 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC28.49■■■□□ 2.15
Scn11aQ9R053 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC28.48■■■□□ 2.15
Scn11aQ9R053 Mir3960-201ENSMUST00000198213 73 ntBASIC28.47■■■□□ 2.15
Scn11aQ9R053 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Retrieved 100 of 76,532 protein–RNA pairs in 92.3 ms