Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Mir6538-201ENSMUST00000183713 110 ntBASIC33.12■■■□□ 2.89
Usp40Q8BWR4 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
Usp40Q8BWR4 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
Usp40Q8BWR4 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
Usp40Q8BWR4 Gm6206-201ENSMUST00000133472 2199 ntBASIC33.07■■■□□ 2.89
Usp40Q8BWR4 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
Usp40Q8BWR4 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
Usp40Q8BWR4 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC33.05■■■□□ 2.88
Usp40Q8BWR4 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC33.05■■■□□ 2.88
Usp40Q8BWR4 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC33.05■■■□□ 2.88
Usp40Q8BWR4 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC33.04■■■□□ 2.88
Usp40Q8BWR4 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC33.04■■■□□ 2.88
Usp40Q8BWR4 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
Usp40Q8BWR4 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
Usp40Q8BWR4 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
Usp40Q8BWR4 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC33.01■■■□□ 2.87
Usp40Q8BWR4 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
Usp40Q8BWR4 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
Usp40Q8BWR4 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
Usp40Q8BWR4 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC32.99■■■□□ 2.87
Usp40Q8BWR4 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC32.98■■■□□ 2.87
Usp40Q8BWR4 Gm37136-201ENSMUST00000194368 194 ntBASIC32.97■■■□□ 2.87
Usp40Q8BWR4 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
Usp40Q8BWR4 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
Usp40Q8BWR4 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Usp40Q8BWR4 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC32.95■■■□□ 2.87
Usp40Q8BWR4 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
Usp40Q8BWR4 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC32.95■■■□□ 2.86
Usp40Q8BWR4 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
Usp40Q8BWR4 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
Usp40Q8BWR4 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
Usp40Q8BWR4 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Usp40Q8BWR4 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
Usp40Q8BWR4 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC32.91■■■□□ 2.86
Usp40Q8BWR4 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Usp40Q8BWR4 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC32.88■■■□□ 2.85
Usp40Q8BWR4 Cap2-205ENSMUST00000225824 1634 ntBASIC32.88■■■□□ 2.85
Usp40Q8BWR4 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC32.88■■■□□ 2.85
Usp40Q8BWR4 Gm4799-201ENSMUST00000095396 657 ntBASIC32.88■■■□□ 2.85
Usp40Q8BWR4 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
Usp40Q8BWR4 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Usp40Q8BWR4 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC32.87■■■□□ 2.85
Usp40Q8BWR4 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
Usp40Q8BWR4 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC32.86■■■□□ 2.85
Usp40Q8BWR4 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC32.86■■■□□ 2.85
Usp40Q8BWR4 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
Usp40Q8BWR4 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC32.86■■■□□ 2.85
Usp40Q8BWR4 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Usp40Q8BWR4 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC32.85■■■□□ 2.85
Usp40Q8BWR4 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC32.85■■■□□ 2.85
Usp40Q8BWR4 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Usp40Q8BWR4 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Usp40Q8BWR4 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Usp40Q8BWR4 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Usp40Q8BWR4 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
Usp40Q8BWR4 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC32.82■■■□□ 2.84
Usp40Q8BWR4 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
Usp40Q8BWR4 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC32.8■■■□□ 2.84
Usp40Q8BWR4 AC154454.1-201ENSMUST00000225253 216 ntBASIC32.8■■■□□ 2.84
Usp40Q8BWR4 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC32.8■■■□□ 2.84
Usp40Q8BWR4 Scarna2-201ENSMUST00000157560 414 ntBASIC32.79■■■□□ 2.84
Usp40Q8BWR4 Mir3960-201ENSMUST00000198213 73 ntBASIC32.79■■■□□ 2.84
Usp40Q8BWR4 Gm45364-201ENSMUST00000210883 159 ntBASIC32.79■■■□□ 2.84
Usp40Q8BWR4 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
Usp40Q8BWR4 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
Usp40Q8BWR4 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
Usp40Q8BWR4 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC32.78■■■□□ 2.84
Usp40Q8BWR4 Pkd1-207ENSMUST00000228550 1050 ntBASIC32.76■■■□□ 2.83
Usp40Q8BWR4 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
Usp40Q8BWR4 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC32.76■■■□□ 2.83
Usp40Q8BWR4 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Usp40Q8BWR4 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC32.75■■■□□ 2.83
Usp40Q8BWR4 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
Usp40Q8BWR4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC32.74■■■□□ 2.83
Usp40Q8BWR4 Amer2-203ENSMUST00000225247 2662 ntBASIC32.73■■■□□ 2.83
Usp40Q8BWR4 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.73■■■□□ 2.83
Usp40Q8BWR4 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC32.73■■■□□ 2.83
Usp40Q8BWR4 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Usp40Q8BWR4 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC32.72■■■□□ 2.83
Usp40Q8BWR4 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Usp40Q8BWR4 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC32.7■■■□□ 2.82
Usp40Q8BWR4 Gm13889-201ENSMUST00000099689 1386 ntBASIC32.7■■■□□ 2.82
Usp40Q8BWR4 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC32.69■■■□□ 2.82
Usp40Q8BWR4 Gm9806-201ENSMUST00000051080 552 ntBASIC32.69■■■□□ 2.82
Usp40Q8BWR4 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Usp40Q8BWR4 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
Usp40Q8BWR4 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC32.68■■■□□ 2.82
Usp40Q8BWR4 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Usp40Q8BWR4 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC32.67■■■□□ 2.82
Usp40Q8BWR4 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC32.67■■■□□ 2.82
Usp40Q8BWR4 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
Usp40Q8BWR4 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Usp40Q8BWR4 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Usp40Q8BWR4 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Usp40Q8BWR4 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Usp40Q8BWR4 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Usp40Q8BWR4 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
Usp40Q8BWR4 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC32.66■■■□□ 2.82
Usp40Q8BWR4 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC32.65■■■□□ 2.82
Usp40Q8BWR4 Gm16437-201ENSMUST00000025669 507 ntBASIC32.65■■■□□ 2.82
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms