Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC29.02■■■□□ 2.24
Ube4aE9Q735 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC29.02■■■□□ 2.24
Ube4aE9Q735 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC29.01■■■□□ 2.24
Ube4aE9Q735 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Ube4aE9Q735 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Ube4aE9Q735 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Ube4aE9Q735 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Ube4aE9Q735 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC28.99■■■□□ 2.23
Ube4aE9Q735 Gm37136-201ENSMUST00000194368 194 ntBASIC28.97■■■□□ 2.23
Ube4aE9Q735 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Ube4aE9Q735 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Ube4aE9Q735 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Ube4aE9Q735 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Ube4aE9Q735 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Ube4aE9Q735 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
Ube4aE9Q735 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Ube4aE9Q735 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC28.92■■■□□ 2.22
Ube4aE9Q735 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Ube4aE9Q735 Gm4799-201ENSMUST00000095396 657 ntBASIC28.91■■■□□ 2.22
Ube4aE9Q735 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Ube4aE9Q735 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ube4aE9Q735 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ube4aE9Q735 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC28.89■■■□□ 2.22
Ube4aE9Q735 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
Ube4aE9Q735 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC28.88■■■□□ 2.21
Ube4aE9Q735 Cap2-205ENSMUST00000225824 1634 ntBASIC28.88■■■□□ 2.21
Ube4aE9Q735 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC28.88■■■□□ 2.21
Ube4aE9Q735 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Ube4aE9Q735 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC28.87■■■□□ 2.21
Ube4aE9Q735 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC28.87■■■□□ 2.21
Ube4aE9Q735 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC28.87■■■□□ 2.21
Ube4aE9Q735 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC28.86■■■□□ 2.21
Ube4aE9Q735 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
Ube4aE9Q735 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC28.86■■■□□ 2.21
Ube4aE9Q735 AC154454.1-201ENSMUST00000225253 216 ntBASIC28.86■■■□□ 2.21
Ube4aE9Q735 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Ube4aE9Q735 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC28.86■■■□□ 2.21
Ube4aE9Q735 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Ube4aE9Q735 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC28.85■■■□□ 2.21
Ube4aE9Q735 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Ube4aE9Q735 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
Ube4aE9Q735 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Ube4aE9Q735 Mir3960-201ENSMUST00000198213 73 ntBASIC28.83■■■□□ 2.21
Ube4aE9Q735 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
Ube4aE9Q735 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC28.82■■■□□ 2.2
Ube4aE9Q735 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Ube4aE9Q735 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
Ube4aE9Q735 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
Ube4aE9Q735 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC28.81■■■□□ 2.2
Ube4aE9Q735 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Ube4aE9Q735 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Ube4aE9Q735 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
Ube4aE9Q735 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Ube4aE9Q735 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
Ube4aE9Q735 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Ube4aE9Q735 Scarna2-201ENSMUST00000157560 414 ntBASIC28.79■■■□□ 2.2
Ube4aE9Q735 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Ube4aE9Q735 Pkd1-207ENSMUST00000228550 1050 ntBASIC28.79■■■□□ 2.2
Ube4aE9Q735 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Ube4aE9Q735 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Ube4aE9Q735 Gm6206-201ENSMUST00000133472 2199 ntBASIC28.78■■■□□ 2.2
Ube4aE9Q735 Gm45364-201ENSMUST00000210883 159 ntBASIC28.77■■■□□ 2.2
Ube4aE9Q735 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Ube4aE9Q735 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC28.76■■■□□ 2.19
Ube4aE9Q735 Gm13889-201ENSMUST00000099689 1386 ntBASIC28.75■■■□□ 2.19
Ube4aE9Q735 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC28.75■■■□□ 2.19
Ube4aE9Q735 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC28.75■■■□□ 2.19
Ube4aE9Q735 Gm9806-201ENSMUST00000051080 552 ntBASIC28.74■■■□□ 2.19
Ube4aE9Q735 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Ube4aE9Q735 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Ube4aE9Q735 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC28.73■■■□□ 2.19
Ube4aE9Q735 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Ube4aE9Q735 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Ube4aE9Q735 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Ube4aE9Q735 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Ube4aE9Q735 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Ube4aE9Q735 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
Ube4aE9Q735 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Ube4aE9Q735 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC28.7■■■□□ 2.18
Ube4aE9Q735 Gm11687-201ENSMUST00000118911 886 ntBASIC28.69■■■□□ 2.18
Ube4aE9Q735 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Ube4aE9Q735 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Ube4aE9Q735 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Ube4aE9Q735 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Ube4aE9Q735 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC28.67■■■□□ 2.18
Ube4aE9Q735 Gm12818-201ENSMUST00000117562 1349 ntBASIC28.67■■■□□ 2.18
Ube4aE9Q735 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Ube4aE9Q735 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Ube4aE9Q735 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Ube4aE9Q735 Gm16437-201ENSMUST00000025669 507 ntBASIC28.66■■■□□ 2.18
Ube4aE9Q735 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC28.65■■■□□ 2.18
Ube4aE9Q735 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
Ube4aE9Q735 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.17
Ube4aE9Q735 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Ube4aE9Q735 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
Ube4aE9Q735 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC28.62■■■□□ 2.17
Ube4aE9Q735 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Ube4aE9Q735 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Ube4aE9Q735 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC28.6■■■□□ 2.17
Ube4aE9Q735 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms