Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-1A0A075B5Z8 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-1A0A075B5Z8 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-1A0A075B5Z8 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-1A0A075B5Z8 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.95■□□□□ 0.62
Trav6-1A0A075B5Z8 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-1A0A075B5Z8 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-1A0A075B5Z8 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-1A0A075B5Z8 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-1A0A075B5Z8 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav6-1A0A075B5Z8 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav6-1A0A075B5Z8 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Trav6-1A0A075B5Z8 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav6-1A0A075B5Z8 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav6-1A0A075B5Z8 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
Trav6-1A0A075B5Z8 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Trav6-1A0A075B5Z8 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav6-1A0A075B5Z8 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav6-1A0A075B5Z8 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav6-1A0A075B5Z8 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav6-1A0A075B5Z8 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Trav6-1A0A075B5Z8 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav6-1A0A075B5Z8 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav6-1A0A075B5Z8 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Trav6-1A0A075B5Z8 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav6-1A0A075B5Z8 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Trav6-1A0A075B5Z8 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav6-1A0A075B5Z8 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trav6-1A0A075B5Z8 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav6-1A0A075B5Z8 Il17rd-202ENSMUST00000223942 2186 ntBASIC18.91■□□□□ 0.62
Trav6-1A0A075B5Z8 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav6-1A0A075B5Z8 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav6-1A0A075B5Z8 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav6-1A0A075B5Z8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
Trav6-1A0A075B5Z8 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6-1A0A075B5Z8 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6-1A0A075B5Z8 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Trav6-1A0A075B5Z8 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Trav6-1A0A075B5Z8 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Trav6-1A0A075B5Z8 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav6-1A0A075B5Z8 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav6-1A0A075B5Z8 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav6-1A0A075B5Z8 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC18.88■□□□□ 0.61
Trav6-1A0A075B5Z8 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav6-1A0A075B5Z8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav6-1A0A075B5Z8 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6-1A0A075B5Z8 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6-1A0A075B5Z8 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6-1A0A075B5Z8 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC18.85■□□□□ 0.61
Trav6-1A0A075B5Z8 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Trav6-1A0A075B5Z8 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav6-1A0A075B5Z8 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC18.84■□□□□ 0.61
Trav6-1A0A075B5Z8 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.84■□□□□ 0.61
Trav6-1A0A075B5Z8 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trav6-1A0A075B5Z8 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Trav6-1A0A075B5Z8 Gm43863-201ENSMUST00000203822 1192 ntBASIC18.82■□□□□ 0.6
Trav6-1A0A075B5Z8 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Trav6-1A0A075B5Z8 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav6-1A0A075B5Z8 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav6-1A0A075B5Z8 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav6-1A0A075B5Z8 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav6-1A0A075B5Z8 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Trav6-1A0A075B5Z8 AC157572.2-201ENSMUST00000226970 908 ntBASIC18.81■□□□□ 0.6
Trav6-1A0A075B5Z8 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trav6-1A0A075B5Z8 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav6-1A0A075B5Z8 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav6-1A0A075B5Z8 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Trav6-1A0A075B5Z8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-1A0A075B5Z8 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-1A0A075B5Z8 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-1A0A075B5Z8 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-1A0A075B5Z8 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-1A0A075B5Z8 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav6-1A0A075B5Z8 Particl-201ENSMUST00000205370 1560 ntBASIC18.78■□□□□ 0.6
Trav6-1A0A075B5Z8 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC18.78■□□□□ 0.6
Trav6-1A0A075B5Z8 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trav6-1A0A075B5Z8 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav6-1A0A075B5Z8 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC18.77■□□□□ 0.6
Trav6-1A0A075B5Z8 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.77■□□□□ 0.59
Trav6-1A0A075B5Z8 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.77■□□□□ 0.59
Trav6-1A0A075B5Z8 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6-1A0A075B5Z8 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC18.76■□□□□ 0.59
Trav6-1A0A075B5Z8 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Trav6-1A0A075B5Z8 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6-1A0A075B5Z8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6-1A0A075B5Z8 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6-1A0A075B5Z8 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
Trav6-1A0A075B5Z8 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6-1A0A075B5Z8 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Trav6-1A0A075B5Z8 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6-1A0A075B5Z8 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6-1A0A075B5Z8 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC18.73■□□□□ 0.59
Trav6-1A0A075B5Z8 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6-1A0A075B5Z8 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6-1A0A075B5Z8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6-1A0A075B5Z8 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6-1A0A075B5Z8 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.72■□□□□ 0.59
Trav6-1A0A075B5Z8 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6-1A0A075B5Z8 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6-1A0A075B5Z8 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 159.9 ms