Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 AC004817.4-201ENST00000602396 3625 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 CYCSP19-201ENST00000411715 316 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 ACTR3P2-201ENST00000439585 1257 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 YWHAZP2-201ENST00000440317 728 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 RPL23AP93-201ENST00000440847 484 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 SNX18P1Y-201ENST00000616231 511 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 TRIM51GP-201ENST00000534741 1350 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 RAD17P1-201ENST00000418130 2042 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 SOCS5P3-201ENST00000425115 1576 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 SMG1P6-201ENST00000532337 2930 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 RPS3AP25-201ENST00000411660 793 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 RPL34P6-201ENST00000432390 345 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 AC245389.1-201ENST00000605141 529 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 SALL4P2-201ENST00000423288 2910 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 SNORD46.1-201ENST00000364139 104 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 RNA5SP317-201ENST00000410176 116 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 RNA5SP311-201ENST00000411290 116 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 GLUD1P9-201ENST00000420997 1173 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 NDUFB4P12-201ENST00000513465 390 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 RNA5SP315-201ENST00000516340 116 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 RNA5SP312-201ENST00000517068 116 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 MIR4286-201ENST00000580651 93 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 MIR4660-201ENST00000583549 74 ntBASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC88AQ3V6T2 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AC090017.1-201ENST00000548612 1779 ntBASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AL607077.1-201ENST00000401718 499 ntBASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AC007738.1-201ENST00000413892 348 ntBASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AL132765.1-201ENST00000434165 553 ntBASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AC004980.3-201ENST00000447046 365 ntBASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AC023424.1-201ENST00000496058 459 ntBASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AC022726.1-201ENST00000587475 207 ntBASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 AC112200.1-201ENST00000625015 234 ntBASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 RNA5SP196-201ENST00000625967 102 ntBASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 DMD-211ENST00000378707 7410 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC88AQ3V6T2 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
CCDC88AQ3V6T2 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.48
CCDC88AQ3V6T2 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 TCEA1P3-201ENST00000443005 880 ntBASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 AC105137.1-201ENST00000484355 562 ntBASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 TRAV8-5-201ENST00000537369 341 ntBASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 ARF4P1-201ENST00000605447 541 ntBASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms