Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HYALP1-201ENST00000417674 1279 ntBASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 AL732292.1-201ENST00000426692 226 ntBASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 CDC27P1-201ENST00000445384 715 ntBASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 RSL24D1P2-201ENST00000445584 366 ntBASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 AL691482.1-201ENST00000453255 87 ntBASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 RPL23AP56-201ENST00000460778 453 ntBASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 SSR3-206ENST00000476217 807 ntTSL 3 BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 AL162574.1-201ENST00000615702 950 ntBASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 AC108359.1-201ENST00000616451 1211 ntBASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 DLEU1_1.1-201ENST00000618107 190 ntBASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 MTND6P5-201ENST00000448266 512 ntBASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 RNA5SP464-201ENST00000516251 108 ntBASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 AC022884.2-201ENST00000578535 580 ntBASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 AC023575.1-201ENST00000580510 358 ntBASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 AL022401.1-201ENST00000619498 108 ntBASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 AC099654.2-201ENST00000433031 1980 ntBASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
SHROOM4Q9ULL8 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 OR1L6-202ENST00000373684 1044 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 RNA5SP241-201ENST00000391326 114 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 RN7SKP16-201ENST00000410180 299 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 RNA5SP44-201ENST00000410446 133 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 AC114755.2-201ENST00000413520 361 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 TDGF1P1-201ENST00000445734 527 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 AC008782.1-201ENST00000603386 430 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 IGKV1OR2-9-201ENST00000603957 287 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 IGKV1OR2-11-201ENST00000604120 287 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 AC024941.1-201ENST00000612250 334 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 AL161912.2-201ENST00000565707 3007 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 AC004817.4-201ENST00000602396 3625 ntBASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
SHROOM4Q9ULL8 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 BCORP1-203ENST00000513194 5093 ntBASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 MAST4-207ENST00000407621 559 ntTSL 2 BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 RN7SKP106-201ENST00000410832 272 ntBASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 GAPDHP49-201ENST00000421421 961 ntBASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 AC016772.1-201ENST00000444170 1261 ntBASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 CYCSP29-201ENST00000533731 318 ntBASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 OR7M1P-201ENST00000608946 533 ntBASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 AL590410.1-201ENST00000617925 333 ntBASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 MIR6853-201ENST00000619642 74 ntBASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 AC005261.6-201ENST00000623072 1387 ntBASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
SHROOM4Q9ULL8 RNU6-386P-201ENST00000362650 107 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AL158827.1-201ENST00000416300 391 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 RPL12P28-201ENST00000430852 489 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 XKRYP6-201ENST00000440468 1116 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 XKRYP3-201ENST00000442113 1116 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 HMGB1P4-201ENST00000455362 567 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AC027369.5-201ENST00000533838 755 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 RNU6-84P-201ENST00000607737 102 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AC020658.4-201ENST00000613987 684 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AL121890.3-201ENST00000618494 516 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC9.34□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms