Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5□□□□□ -1.61
VPS35Q96QK1 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5□□□□□ -1.61
VPS35Q96QK1 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5□□□□□ -1.61
VPS35Q96QK1 GMCL1P2-201ENST00000605230 823 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 AL445222.1-201ENST00000607259 628 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 AC015922.4-201ENST00000612568 690 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 SCARNA15-201ENST00000607520 4325 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS35Q96QK1 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5□□□□□ -1.61
VPS35Q96QK1 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS35Q96QK1 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5□□□□□ -1.61
VPS35Q96QK1 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
VPS35Q96QK1 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
VPS35Q96QK1 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS35Q96QK1 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
VPS35Q96QK1 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5□□□□□ -1.61
VPS35Q96QK1 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 MTCO1P15-201ENST00000529569 1526 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 RNA5SP428-201ENST00000365129 132 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 RNA5SP455-201ENST00000365190 119 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 UBBP2-201ENST00000376781 231 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 GJA6P-201ENST00000415117 1042 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 HMGB1P32-201ENST00000425971 565 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 TPTE2P1-204ENST00000435256 593 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 RHOT1P3-201ENST00000436571 331 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 RPL7AP61-201ENST00000443410 636 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 RPL37AP8-201ENST00000494116 276 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 RN7SL808P-201ENST00000496066 299 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 AL358913.1-201ENST00000554342 121 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 EIF3FP1-201ENST00000613970 806 ntBASIC4.99□□□□□ -1.61
VPS35Q96QK1 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS35Q96QK1 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.99□□□□□ -1.61
VPS35Q96QK1 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 AL356317.1-201ENST00000396110 1436 ntBASIC4.98□□□□□ -1.61
VPS35Q96QK1 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 CYCSP24-201ENST00000445119 316 ntBASIC4.98□□□□□ -1.61
VPS35Q96QK1 TCEA1P1-201ENST00000449716 880 ntBASIC4.98□□□□□ -1.61
VPS35Q96QK1 AC002553.2-201ENST00000453217 340 ntBASIC4.98□□□□□ -1.61
VPS35Q96QK1 RPL31P53-201ENST00000457065 348 ntBASIC4.98□□□□□ -1.61
VPS35Q96QK1 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 FAM106CP-201ENST00000582212 507 ntBASIC4.98□□□□□ -1.61
VPS35Q96QK1 AL592494.3-201ENST00000609485 464 ntBASIC4.98□□□□□ -1.61
VPS35Q96QK1 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 AC074140.1-201ENST00000621617 208 ntBASIC4.98□□□□□ -1.61
VPS35Q96QK1 AC112694.2-201ENST00000623697 768 ntBASIC4.98□□□□□ -1.61
VPS35Q96QK1 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VPS35Q96QK1 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS35Q96QK1 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS35Q96QK1 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms