Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.6
COL4A4P53420 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
COL4A4P53420 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC5.09□□□□□ -1.6
COL4A4P53420 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL4A4P53420 TEX41-203ENST00000420472 765 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A4P53420 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.08□□□□□ -1.6
COL4A4P53420 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.08□□□□□ -1.6
COL4A4P53420 AC004980.3-201ENST00000447046 365 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC017007.3-201ENST00000479865 435 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC005868.1-201ENST00000536421 331 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A4P53420 AC034105.4-201ENST00000568304 277 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC022726.1-201ENST00000587475 207 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC245389.1-201ENST00000605141 529 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 ARF4P1-201ENST00000605447 541 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC090948.2-201ENST00000607363 564 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC006133.1-201ENST00000617106 264 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.08□□□□□ -1.6
COL4A4P53420 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC5.08□□□□□ -1.6
COL4A4P53420 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL4A4P53420 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.08□□□□□ -1.6
COL4A4P53420 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.08□□□□□ -1.6
COL4A4P53420 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.08□□□□□ -1.6
COL4A4P53420 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL4A4P53420 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
COL4A4P53420 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.08□□□□□ -1.6
COL4A4P53420 RN7SKP267-201ENST00000410381 285 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A4P53420 CASKP1-201ENST00000412870 582 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 TMBIM7P-201ENST00000418074 855 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A4P53420 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.08□□□□□ -1.6
COL4A4P53420 RPL34P6-201ENST00000432390 345 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 RHEBP2-201ENST00000450289 600 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL4A4P53420 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A4P53420 DEFB109A-201ENST00000482450 265 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AP002812.1-201ENST00000495378 474 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC073358.1-201ENST00000505671 684 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC106806.2-201ENST00000509365 500 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 RNU1-6P-201ENST00000516290 144 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 RNU1-45P-201ENST00000517191 141 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC138832.1-201ENST00000522871 556 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AP000889.1-201ENST00000530968 660 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.08□□□□□ -1.6
COL4A4P53420 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A4P53420 AC069061.3-201ENST00000582254 823 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A4P53420 AC073091.2-201ENST00000603205 907 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.08□□□□□ -1.6
COL4A4P53420 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A4P53420 AP003497.2-201ENST00000624220 967 ntBASIC5.08□□□□□ -1.6
COL4A4P53420 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
COL4A4P53420 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A4P53420 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.08□□□□□ -1.6
COL4A4P53420 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A4P53420 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.07□□□□□ -1.6
COL4A4P53420 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.07□□□□□ -1.6
COL4A4P53420 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.07□□□□□ -1.6
COL4A4P53420 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
COL4A4P53420 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A4P53420 AC107068.1-201ENST00000563286 4218 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 AL034370.1-201ENST00000397254 1590 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC5.07□□□□□ -1.6
COL4A4P53420 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A4P53420 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A4P53420 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A4P53420 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A4P53420 MIR659-201ENST00000384963 97 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 RNA5SP317-201ENST00000410176 116 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 RNA5SP44-201ENST00000410446 133 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 RNA5SP311-201ENST00000411290 116 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 YWHAZP2-201ENST00000440317 728 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.07□□□□□ -1.6
COL4A4P53420 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.07□□□□□ -1.6
COL4A4P53420 AC025164.1-201ENST00000496249 478 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 AC091868.1-201ENST00000508746 304 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 RNA5SP315-201ENST00000516340 116 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 RNA5SP312-201ENST00000517068 116 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 BUD31P1-201ENST00000521828 359 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.07□□□□□ -1.6
COL4A4P53420 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.07□□□□□ -1.6
COL4A4P53420 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 AC007497.1-201ENST00000610421 561 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 AC034229.5-201ENST00000624258 185 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 AC006453.5-201ENST00000636451 619 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 AC010168.2-201ENST00000562691 5428 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms