Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC7.79□□□□□ -1.16
CUX1P39880 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
CUX1P39880 AC073342.2-201ENST00000595842 1800 ntBASIC7.79□□□□□ -1.16
CUX1P39880 TRIM51GP-201ENST00000534741 1350 ntBASIC7.79□□□□□ -1.16
CUX1P39880 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
CUX1P39880 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC7.79□□□□□ -1.16
CUX1P39880 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CUX1P39880 SNX18P3-202ENST00000565670 1750 ntBASIC7.79□□□□□ -1.16
CUX1P39880 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CUX1P39880 AL122126.1-201ENST00000546905 1318 ntBASIC7.79□□□□□ -1.16
CUX1P39880 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
CUX1P39880 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CUX1P39880 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CUX1P39880 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC7.79□□□□□ -1.16
CUX1P39880 MED23-203ENST00000368058 4576 ntTSL 5 BASIC7.78□□□□□ -1.16
CUX1P39880 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
CUX1P39880 OR8G2P-201ENST00000412796 908 ntBASIC7.78□□□□□ -1.16
CUX1P39880 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
CUX1P39880 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC7.78□□□□□ -1.16
CUX1P39880 AC090142.1-201ENST00000465776 462 ntBASIC7.78□□□□□ -1.16
CUX1P39880 AC034236.1-201ENST00000469891 373 ntBASIC7.78□□□□□ -1.16
CUX1P39880 UQCRHP4-201ENST00000471686 272 ntBASIC7.78□□□□□ -1.16
CUX1P39880 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC7.78□□□□□ -1.16
CUX1P39880 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CUX1P39880 AL049830.4-201ENST00000555149 351 ntBASIC7.78□□□□□ -1.16
CUX1P39880 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC7.78□□□□□ -1.16
CUX1P39880 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC7.78□□□□□ -1.16
CUX1P39880 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC7.78□□□□□ -1.16
CUX1P39880 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CUX1P39880 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.16
CUX1P39880 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CUX1P39880 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
CUX1P39880 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CUX1P39880 AC011933.1-201ENST00000413334 321 ntBASIC7.78□□□□□ -1.16
CUX1P39880 RPL36AP36-201ENST00000418616 301 ntBASIC7.78□□□□□ -1.16
CUX1P39880 SLC4A1APP1-201ENST00000419995 602 ntBASIC7.78□□□□□ -1.16
CUX1P39880 PHBP16-201ENST00000446318 950 ntBASIC7.78□□□□□ -1.16
CUX1P39880 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC7.78□□□□□ -1.16
CUX1P39880 MRPL35P2-201ENST00000448009 511 ntBASIC7.78□□□□□ -1.16
CUX1P39880 DHFRP3-201ENST00000455595 559 ntBASIC7.78□□□□□ -1.16
CUX1P39880 AC116533.1-201ENST00000459748 321 ntBASIC7.78□□□□□ -1.16
CUX1P39880 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC7.78□□□□□ -1.16
CUX1P39880 AC108475.1-201ENST00000507880 950 ntBASIC7.78□□□□□ -1.16
CUX1P39880 RPL23AP53-201ENST00000521854 457 ntBASIC7.78□□□□□ -1.16
CUX1P39880 AP003730.1-201ENST00000524605 285 ntBASIC7.78□□□□□ -1.16
CUX1P39880 AC005868.1-201ENST00000536421 331 ntBASIC7.78□□□□□ -1.16
CUX1P39880 AC034105.4-201ENST00000568304 277 ntBASIC7.78□□□□□ -1.16
CUX1P39880 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC7.78□□□□□ -1.16
CUX1P39880 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.16
CUX1P39880 AC007159.1-201ENST00000566529 4706 ntBASIC7.77□□□□□ -1.16
CUX1P39880 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC7.77□□□□□ -1.16
CUX1P39880 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
CUX1P39880 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC7.77□□□□□ -1.17
CUX1P39880 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC7.77□□□□□ -1.17
CUX1P39880 POMP-202ENST00000460403 1428 ntTSL 3 BASIC7.77□□□□□ -1.17
CUX1P39880 NOL8P1-201ENST00000508336 3529 ntBASIC7.77□□□□□ -1.17
CUX1P39880 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC7.77□□□□□ -1.17
CUX1P39880 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
CUX1P39880 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC7.77□□□□□ -1.17
CUX1P39880 PPIAP31-201ENST00000405422 495 ntBASIC7.77□□□□□ -1.17
CUX1P39880 RGS17P1-201ENST00000423358 553 ntBASIC7.77□□□□□ -1.17
CUX1P39880 SNORA84-201ENST00000459229 133 ntBASIC7.77□□□□□ -1.17
CUX1P39880 GLRXP2-201ENST00000555594 321 ntBASIC7.77□□□□□ -1.17
CUX1P39880 MIR4429-201ENST00000580105 73 ntBASIC7.77□□□□□ -1.17
CUX1P39880 RN7SL176P-201ENST00000580352 264 ntBASIC7.77□□□□□ -1.17
CUX1P39880 AP005019.3-201ENST00000620418 560 ntBASIC7.77□□□□□ -1.17
CUX1P39880 AC009120.7-201ENST00000623452 780 ntBASIC7.77□□□□□ -1.17
CUX1P39880 AP003497.2-201ENST00000624220 967 ntBASIC7.77□□□□□ -1.17
CUX1P39880 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
CUX1P39880 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
CUX1P39880 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC7.77□□□□□ -1.17
CUX1P39880 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC7.76□□□□□ -1.17
CUX1P39880 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC7.76□□□□□ -1.17
CUX1P39880 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CUX1P39880 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC7.76□□□□□ -1.17
CUX1P39880 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC7.76□□□□□ -1.17
CUX1P39880 AC020656.2-201ENST00000613291 5309 ntBASIC7.76□□□□□ -1.17
CUX1P39880 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
CUX1P39880 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CUX1P39880 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC7.76□□□□□ -1.17
CUX1P39880 RAB9AP4-201ENST00000415230 609 ntBASIC7.76□□□□□ -1.17
CUX1P39880 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC7.76□□□□□ -1.17
CUX1P39880 AL139095.3-201ENST00000419672 1203 ntBASIC7.76□□□□□ -1.17
CUX1P39880 TDGF1P1-201ENST00000445734 527 ntBASIC7.76□□□□□ -1.17
CUX1P39880 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC7.76□□□□□ -1.17
CUX1P39880 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC7.76□□□□□ -1.17
CUX1P39880 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CUX1P39880 AC023424.1-201ENST00000496058 459 ntBASIC7.76□□□□□ -1.17
CUX1P39880 AC006130.2-201ENST00000586202 326 ntBASIC7.76□□□□□ -1.17
CUX1P39880 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC7.76□□□□□ -1.17
CUX1P39880 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CUX1P39880 AC020634.1-201ENST00000608701 549 ntBASIC7.76□□□□□ -1.17
CUX1P39880 MIR6891-201ENST00000618788 93 ntBASIC7.76□□□□□ -1.17
CUX1P39880 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
CUX1P39880 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CUX1P39880 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
CUX1P39880 AL360270.2-201ENST00000562952 5985 ntBASIC7.75□□□□□ -1.17
CUX1P39880 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
CUX1P39880 EIF2AP4-201ENST00000424793 1781 ntBASIC7.75□□□□□ -1.17
CUX1P39880 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms