Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC120349.3-201ENST00000624377 529 ntBASIC6.34□□□□□ -1.4
COL3A1P02461 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL3A1P02461 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.34□□□□□ -1.4
COL3A1P02461 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 DHX40P1-201ENST00000588725 1412 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC6.33□□□□□ -1.4
COL3A1P02461 AC093671.1-201ENST00000624981 2929 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 MIR659-201ENST00000384963 97 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
COL3A1P02461 RNA5SP397-201ENST00000391323 118 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL3A1P02461 VTI1BP4-201ENST00000427516 527 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 ZNF736P8Y-201ENST00000451913 669 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 HNRNPDLP2-201ENST00000455248 751 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 TPRKBP1-201ENST00000456243 481 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.33□□□□□ -1.4
COL3A1P02461 RPL23AP72-201ENST00000492447 435 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC6.33□□□□□ -1.4
COL3A1P02461 AC025164.1-201ENST00000496249 478 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
COL3A1P02461 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC6.33□□□□□ -1.4
COL3A1P02461 OR5AN2P-201ENST00000534535 896 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 AL359219.2-201ENST00000555184 348 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 AL391834.2-201ENST00000609982 546 ntBASIC6.33□□□□□ -1.4
COL3A1P02461 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
COL3A1P02461 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC6.33□□□□□ -1.4
COL3A1P02461 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC6.33□□□□□ -1.4
COL3A1P02461 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL3A1P02461 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
COL3A1P02461 AL031119.1-201ENST00000404707 1879 ntBASIC6.32□□□□□ -1.4
COL3A1P02461 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
COL3A1P02461 AL445523.1-201ENST00000451184 1362 ntBASIC6.32□□□□□ -1.4
COL3A1P02461 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC6.32□□□□□ -1.4
COL3A1P02461 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL3A1P02461 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC6.32□□□□□ -1.4
COL3A1P02461 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL3A1P02461 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL3A1P02461 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL3A1P02461 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL3A1P02461 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.32□□□□□ -1.4
COL3A1P02461 AL590762.2-201ENST00000395798 571 ntBASIC6.32□□□□□ -1.4
COL3A1P02461 RN7SKP106-201ENST00000410832 272 ntBASIC6.32□□□□□ -1.4
COL3A1P02461 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC6.32□□□□□ -1.4
COL3A1P02461 AL158053.1-201ENST00000441503 453 ntBASIC6.32□□□□□ -1.4
COL3A1P02461 GYG1P1-201ENST00000460864 698 ntBASIC6.32□□□□□ -1.4
COL3A1P02461 OR52A4P-201ENST00000472867 958 ntBASIC6.32□□□□□ -1.4
COL3A1P02461 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC6.32□□□□□ -1.4
COL3A1P02461 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC6.32□□□□□ -1.4
COL3A1P02461 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC6.32□□□□□ -1.4
COL3A1P02461 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL3A1P02461 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL3A1P02461 AC008147.3-201ENST00000548666 354 ntBASIC6.32□□□□□ -1.4
COL3A1P02461 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC6.32□□□□□ -1.4
COL3A1P02461 AC074050.1-201ENST00000563247 211 ntBASIC6.32□□□□□ -1.4
COL3A1P02461 PHACTR2P1-201ENST00000605639 1414 ntBASIC6.32□□□□□ -1.4
COL3A1P02461 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC6.32□□□□□ -1.4
COL3A1P02461 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL3A1P02461 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC6.32□□□□□ -1.4
COL3A1P02461 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL3A1P02461 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.32□□□□□ -1.4
COL3A1P02461 AL592148.3-201ENST00000608771 2646 ntBASIC6.31□□□□□ -1.4
COL3A1P02461 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL3A1P02461 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL3A1P02461 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL3A1P02461 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL3A1P02461 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL3A1P02461 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL3A1P02461 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL3A1P02461 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL3A1P02461 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
COL3A1P02461 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL3A1P02461 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC6.31□□□□□ -1.4
COL3A1P02461 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC6.31□□□□□ -1.4
COL3A1P02461 MTCO2P17-201ENST00000424336 677 ntBASIC6.31□□□□□ -1.4
COL3A1P02461 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.31□□□□□ -1.4
COL3A1P02461 YWHAZP2-201ENST00000440317 728 ntBASIC6.31□□□□□ -1.4
COL3A1P02461 TCEA1P3-201ENST00000443005 880 ntBASIC6.31□□□□□ -1.4
COL3A1P02461 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC6.31□□□□□ -1.4
COL3A1P02461 TVP23BP2-201ENST00000455082 615 ntBASIC6.31□□□□□ -1.4
COL3A1P02461 AC093166.2-201ENST00000455969 1017 ntBASIC6.31□□□□□ -1.4
COL3A1P02461 AC023424.1-201ENST00000496058 459 ntBASIC6.31□□□□□ -1.4
COL3A1P02461 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC6.31□□□□□ -1.4
COL3A1P02461 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC6.31□□□□□ -1.4
COL3A1P02461 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC6.31□□□□□ -1.4
COL3A1P02461 AC067805.1-201ENST00000559344 470 ntBASIC6.31□□□□□ -1.4
COL3A1P02461 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC6.31□□□□□ -1.4
COL3A1P02461 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC6.31□□□□□ -1.4
COL3A1P02461 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC6.31□□□□□ -1.4
COL3A1P02461 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms