Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC061975.8-201ENST00000587058 721 ntBASIC5.65□□□□□ -1.5
VPS4BO75351 AC015802.2-201ENST00000589690 189 ntBASIC5.65□□□□□ -1.5
VPS4BO75351 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS4BO75351 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS4BO75351 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS4BO75351 AC069304.3-201ENST00000603938 1084 ntBASIC5.65□□□□□ -1.5
VPS4BO75351 AC005377.1-201ENST00000605126 456 ntBASIC5.65□□□□□ -1.5
VPS4BO75351 AC080013.6-201ENST00000606185 215 ntBASIC5.65□□□□□ -1.5
VPS4BO75351 AC004948.1-201ENST00000609858 672 ntBASIC5.65□□□□□ -1.5
VPS4BO75351 AC092106.3-201ENST00000611308 722 ntBASIC5.65□□□□□ -1.5
VPS4BO75351 RNA5SP440-201ENST00000612665 119 ntBASIC5.65□□□□□ -1.5
VPS4BO75351 AL139099.4-201ENST00000614802 114 ntBASIC5.65□□□□□ -1.5
VPS4BO75351 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
VPS4BO75351 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS4BO75351 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
VPS4BO75351 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS4BO75351 AC117409.1-201ENST00000470499 1310 ntBASIC5.65□□□□□ -1.51
VPS4BO75351 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS4BO75351 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
VPS4BO75351 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
VPS4BO75351 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
VPS4BO75351 MFSD8-239ENST00000641590 2479 ntBASIC5.65□□□□□ -1.51
VPS4BO75351 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
VPS4BO75351 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.65□□□□□ -1.51
VPS4BO75351 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.65□□□□□ -1.51
VPS4BO75351 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 MTCO1P7-201ENST00000419523 1542 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AC011503.2-201ENST00000594230 1500 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 AC003973.3-201ENST00000624863 2822 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
VPS4BO75351 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
VPS4BO75351 TMSB4XP2-201ENST00000335179 210 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 MIR133A2-201ENST00000347538 102 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
VPS4BO75351 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 RNU6-636P-201ENST00000384598 107 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 SNORD65C-201ENST00000390962 71 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 MIR1203-201ENST00000408812 85 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AL355433.1-201ENST00000422804 300 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 RPS27P18-201ENST00000431701 247 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 RPS12P17-201ENST00000438591 377 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 AC023141.8-201ENST00000442554 208 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 RNF148-202ENST00000447240 839 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.64□□□□□ -1.51
VPS4BO75351 AC239798.3-201ENST00000454459 408 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 SNORD125-201ENST00000459538 96 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 UBFD1P1-201ENST00000473259 814 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 AC011037.1-201ENST00000483964 558 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AC004815.1-201ENST00000484185 331 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AC105384.2-201ENST00000508433 640 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 AC092593.2-201ENST00000513866 913 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 RNA5SP362-201ENST00000516048 118 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 IGHV3-63-201ENST00000518422 341 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.64□□□□□ -1.51
VPS4BO75351 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS4BO75351 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS4BO75351 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS4BO75351 GARSP1-201ENST00000570895 719 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 TXNP4-201ENST00000575018 310 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
VPS4BO75351 ZNF92P3-201ENST00000596594 954 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AL022394.1-201ENST00000606979 292 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AP004607.9-201ENST00000618202 316 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 AC091304.6-201ENST00000619761 202 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AC010435.1-201ENST00000623353 1177 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AL512506.2-201ENST00000624472 458 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AC024023.1-201ENST00000624530 922 ntBASIC5.64□□□□□ -1.51
VPS4BO75351 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
VPS4BO75351 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
VPS4BO75351 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
VPS4BO75351 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS4BO75351 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
VPS4BO75351 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms