Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 REREP2Y-201ENST00000439103 200 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 RBMY2TP-201ENST00000451162 947 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AC093166.2-201ENST00000455969 1017 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 RPL23AP53-201ENST00000521854 457 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 EDDM3DP-201ENST00000554692 434 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 SNORD39.2-201ENST00000579995 76 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AC022387.2-201ENST00000604050 448 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AL031320.1-201ENST00000604177 357 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AC010424.2-201ENST00000607594 443 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AL049539.1-201ENST00000611964 459 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 MIR6730-201ENST00000622213 67 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AC073136.1-201ENST00000449426 2884 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AC009643.2-201ENST00000603543 1448 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 RNA5SP191-201ENST00000362585 102 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 RNU6-618P-201ENST00000363518 112 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 GAPDHP15-201ENST00000398586 975 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC007738.1-201ENST00000413892 348 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC007559.1-201ENST00000428736 355 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 SLC25A18P1-201ENST00000449385 454 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 RPL31P20-201ENST00000449593 360 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC010733.1-201ENST00000451515 401 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AL645937.3-201ENST00000453647 936 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AURKAPS2-201ENST00000454983 333 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 RN7SL517P-201ENST00000462240 305 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 OR11I1P-201ENST00000486033 954 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC105233.1-201ENST00000498840 781 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AL049839.1-201ENST00000556151 657 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 BGLT3-201ENST00000564523 994 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 MTND2P13-201ENST00000577438 1039 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC005084.1-201ENST00000605160 304 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC012213.4-201ENST00000606457 354 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC015722.2-201ENST00000622210 551 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC091953.3-201ENST00000623220 236 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 CR381572.2-201ENST00000624852 397 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
LHX3Q9UBR4 AC132825.1-201ENST00000463573 2247 ntBASIC4.95□□□□□ -1.62
LHX3Q9UBR4 MAPK10-328ENST00000641553 4009 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC112198.2-201ENST00000426589 6996 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 MTCO1P7-201ENST00000419523 1542 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 U3.30-201ENST00000391308 210 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AL133270.1-201ENST00000402635 279 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 SNORA11B-201ENST00000408175 129 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC004074.1-201ENST00000421810 1063 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC104333.2-201ENST00000422630 192 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 RSL24D1P2-201ENST00000445584 366 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 SBDSP1-204ENST00000453858 737 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC063943.1-201ENST00000465434 453 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC083982.1-201ENST00000485679 344 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms