Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AC005351.1-201ENST00000511152 786 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 RN7SKP5-201ENST00000517045 272 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 CDH12P4-201ENST00000517835 295 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 CDH12P3-201ENST00000517935 295 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 CDH12P1-201ENST00000518435 295 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
EBF3Q9H4W6 DUXAP5-201ENST00000529668 529 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 AC068339.2-201ENST00000534395 618 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 AC024940.3-201ENST00000538551 316 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 YWHABP2-201ENST00000540201 713 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
EBF3Q9H4W6 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.51□□□□□ -1.53
EBF3Q9H4W6 FAM60CP-201ENST00000591086 664 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 Z99289.3-201ENST00000605586 594 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 AL356608.1-201ENST00000610034 820 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 MIR6798-201ENST00000612887 67 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.51□□□□□ -1.53
EBF3Q9H4W6 CASC19-261ENST00000641853 1638 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
EBF3Q9H4W6 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.51□□□□□ -1.53
EBF3Q9H4W6 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
EBF3Q9H4W6 AL513548.1-201ENST00000562904 1724 ntBASIC5.51□□□□□ -1.53
EBF3Q9H4W6 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
EBF3Q9H4W6 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
EBF3Q9H4W6 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC106754.1-201ENST00000562632 1513 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 RN7SKP115-201ENST00000363177 317 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 CCNB2P1-201ENST00000399411 1150 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 PTGES3P2-201ENST00000407942 482 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 LUZP4P1-201ENST00000415420 344 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AL365338.1-201ENST00000422282 858 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 EIF3KP3-201ENST00000514461 639 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 RN7SKP147-201ENST00000517154 244 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AP001922.4-201ENST00000526967 290 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC011840.5-201ENST00000582125 771 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC006363.1-201ENST00000603806 463 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC098935.2-201ENST00000604222 466 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC106052.1-201ENST00000608029 497 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC009464.1-201ENST00000615731 469 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC099494.2-201ENST00000623371 978 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC073869.8-201ENST00000641806 335 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 AC011755.1-201ENST00000623763 2049 ntBASIC5.5□□□□□ -1.53
EBF3Q9H4W6 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.5□□□□□ -1.53
EBF3Q9H4W6 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 OR4K17-201ENST00000315543 1032 ntBASIC5.49□□□□□ -1.53
EBF3Q9H4W6 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 RNU6-618P-201ENST00000363518 112 ntBASIC5.49□□□□□ -1.53
EBF3Q9H4W6 SNORA27.3-201ENST00000364937 134 ntBASIC5.49□□□□□ -1.53
EBF3Q9H4W6 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
EBF3Q9H4W6 Z83846.1-201ENST00000446798 265 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms