Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AP001781.1-201ENST00000530977 207 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC6.35□□□□□ -1.39
HOXC9P31274 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6.35□□□□□ -1.39
HOXC9P31274 AC008782.1-201ENST00000603386 430 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 AC005962.2-201ENST00000611427 652 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 MLECP1-201ENST00000615893 709 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 AC004232.3-201ENST00000622977 525 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC6.35□□□□□ -1.39
HOXC9P31274 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.35□□□□□ -1.39
HOXC9P31274 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.35□□□□□ -1.39
HOXC9P31274 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.35□□□□□ -1.39
HOXC9P31274 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 CCT8P1-201ENST00000413611 1657 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 AC063976.2-201ENST00000425667 3556 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
HOXC9P31274 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.34□□□□□ -1.39
HOXC9P31274 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC6.34□□□□□ -1.39
HOXC9P31274 MED23-203ENST00000368058 4576 ntTSL 5 BASIC6.34□□□□□ -1.39
HOXC9P31274 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HOXC9P31274 TRIM51GP-201ENST00000534741 1350 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
HOXC9P31274 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HOXC9P31274 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HOXC9P31274 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.34□□□□□ -1.39
HOXC9P31274 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC6.34□□□□□ -1.39
HOXC9P31274 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.34□□□□□ -1.39
HOXC9P31274 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 TRIM60P9Y-201ENST00000438459 816 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 TRIM60P11Y-201ENST00000445313 801 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 RPL10P17-201ENST00000453852 316 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 AC007688.1-201ENST00000475592 759 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 RPL36AP41-201ENST00000493820 306 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 AC083829.1-201ENST00000503756 657 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC6.34□□□□□ -1.39
HOXC9P31274 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC6.34□□□□□ -1.39
HOXC9P31274 AC084783.1-201ENST00000565846 910 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC6.34□□□□□ -1.39
HOXC9P31274 PRELID3BP3-201ENST00000584963 545 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC6.34□□□□□ -1.39
HOXC9P31274 AC020910.2-201ENST00000603635 610 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 AC006338.2-201ENST00000616864 791 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 MIR6830-201ENST00000636015 70 ntBASIC6.34□□□□□ -1.39
HOXC9P31274 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.34□□□□□ -1.39
HOXC9P31274 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC6.34□□□□□ -1.39
HOXC9P31274 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.4
HOXC9P31274 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
HOXC9P31274 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC6.33□□□□□ -1.4
HOXC9P31274 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC9P31274 AC022417.1-201ENST00000624768 1303 ntBASIC6.33□□□□□ -1.4
HOXC9P31274 BMPR1APS1-201ENST00000403332 1598 ntBASIC6.33□□□□□ -1.4
HOXC9P31274 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.33□□□□□ -1.4
HOXC9P31274 AC023141.6-201ENST00000429418 337 ntBASIC6.33□□□□□ -1.4
HOXC9P31274 VDAC1P6-201ENST00000430062 855 ntBASIC6.33□□□□□ -1.4
HOXC9P31274 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC9P31274 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.33□□□□□ -1.4
HOXC9P31274 MTND4LP2-201ENST00000502312 285 ntBASIC6.33□□□□□ -1.4
HOXC9P31274 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC9P31274 SNORD116-30-201ENST00000516468 85 ntBASIC6.33□□□□□ -1.4
HOXC9P31274 RNU4-18P-201ENST00000516751 149 ntBASIC6.33□□□□□ -1.4
HOXC9P31274 AC005191.1-201ENST00000603950 358 ntBASIC6.33□□□□□ -1.4
HOXC9P31274 AC115286.1-201ENST00000604298 434 ntBASIC6.33□□□□□ -1.4
HOXC9P31274 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC6.33□□□□□ -1.4
HOXC9P31274 AL049536.1-201ENST00000625043 744 ntBASIC6.33□□□□□ -1.4
HOXC9P31274 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC9P31274 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC9P31274 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.33□□□□□ -1.4
HOXC9P31274 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
HOXC9P31274 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.33□□□□□ -1.4
HOXC9P31274 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC6.33□□□□□ -1.4
HOXC9P31274 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
HOXC9P31274 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC6.32□□□□□ -1.4
HOXC9P31274 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.32□□□□□ -1.4
HOXC9P31274 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC9P31274 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC9P31274 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC9P31274 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
HOXC9P31274 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC9P31274 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC6.32□□□□□ -1.4
HOXC9P31274 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
HOXC9P31274 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC9P31274 RN7SKP267-201ENST00000410381 285 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 AC244453.4-201ENST00000419150 388 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC6.32□□□□□ -1.4
HOXC9P31274 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
HOXC9P31274 AC092162.1-201ENST00000432828 434 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 AL451139.1-201ENST00000434718 346 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC9P31274 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC9P31274 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC9P31274 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC9P31274 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC6.32□□□□□ -1.4
HOXC9P31274 MTND3P6-201ENST00000485242 339 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 AC113398.2-201ENST00000507630 558 ntBASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms