Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 RPL23P2-201ENST00000320371 421 ntBASIC5.11□□□□□ -1.59
MSH3P20585 AC017079.1-201ENST00000333650 415 ntBASIC5.11□□□□□ -1.59
MSH3P20585 MIR1178-201ENST00000408396 91 ntBASIC5.11□□□□□ -1.59
MSH3P20585 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 AC007738.1-201ENST00000413892 348 ntBASIC5.11□□□□□ -1.59
MSH3P20585 BX510359.3-201ENST00000422168 306 ntBASIC5.11□□□□□ -1.59
MSH3P20585 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 SEC63P1-201ENST00000425785 1258 ntBASIC5.11□□□□□ -1.59
MSH3P20585 NPM1P26-201ENST00000426339 738 ntBASIC5.11□□□□□ -1.59
MSH3P20585 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.11□□□□□ -1.59
MSH3P20585 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.11□□□□□ -1.59
MSH3P20585 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.11□□□□□ -1.59
MSH3P20585 AC020779.1-201ENST00000478757 796 ntBASIC5.11□□□□□ -1.59
MSH3P20585 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 RNU6-491P-201ENST00000516099 110 ntBASIC5.11□□□□□ -1.59
MSH3P20585 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 OR8A2P-201ENST00000528631 952 ntBASIC5.11□□□□□ -1.59
MSH3P20585 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 AL390334.1-201ENST00000556395 450 ntBASIC5.11□□□□□ -1.59
MSH3P20585 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 AC067838.1-201ENST00000606064 577 ntBASIC5.11□□□□□ -1.59
MSH3P20585 AL451049.1-201ENST00000608672 497 ntBASIC5.11□□□□□ -1.59
MSH3P20585 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.11□□□□□ -1.59
MSH3P20585 AC097372.4-201ENST00000625025 466 ntBASIC5.11□□□□□ -1.59
MSH3P20585 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.11□□□□□ -1.59
MSH3P20585 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 PANDAR-201ENST00000629595 1506 ntBASIC5.11□□□□□ -1.59
MSH3P20585 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.11□□□□□ -1.59
MSH3P20585 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 AC114947.2-201ENST00000565748 2125 ntBASIC5.11□□□□□ -1.59
MSH3P20585 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.1□□□□□ -1.59
MSH3P20585 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.1□□□□□ -1.59
MSH3P20585 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
MSH3P20585 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.1□□□□□ -1.59
MSH3P20585 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 THAP12P5-201ENST00000405864 2275 ntBASIC5.1□□□□□ -1.59
MSH3P20585 AL390316.1-201ENST00000406279 553 ntBASIC5.1□□□□□ -1.59
MSH3P20585 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.1□□□□□ -1.59
MSH3P20585 U3.36-201ENST00000408418 213 ntBASIC5.1□□□□□ -1.59
MSH3P20585 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.1□□□□□ -1.59
MSH3P20585 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.1□□□□□ -1.59
MSH3P20585 TCP1P3-201ENST00000414406 1498 ntBASIC5.1□□□□□ -1.59
MSH3P20585 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.1□□□□□ -1.59
MSH3P20585 MTND2P9-201ENST00000422293 931 ntBASIC5.1□□□□□ -1.59
MSH3P20585 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.1□□□□□ -1.59
MSH3P20585 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.1□□□□□ -1.59
MSH3P20585 ZNF736P6Y-201ENST00000447526 1213 ntBASIC5.1□□□□□ -1.59
MSH3P20585 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC5.1□□□□□ -1.59
MSH3P20585 AC110749.1-201ENST00000462007 357 ntBASIC5.1□□□□□ -1.59
MSH3P20585 AC026348.1-201ENST00000462549 1053 ntBASIC5.1□□□□□ -1.59
MSH3P20585 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC5.1□□□□□ -1.59
MSH3P20585 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.1□□□□□ -1.59
MSH3P20585 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.1□□□□□ -1.59
MSH3P20585 AC097173.1-201ENST00000505862 819 ntBASIC5.1□□□□□ -1.59
MSH3P20585 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.1□□□□□ -1.59
MSH3P20585 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.1□□□□□ -1.59
MSH3P20585 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
MSH3P20585 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 OR11J2P-201ENST00000555298 907 ntBASIC5.1□□□□□ -1.59
MSH3P20585 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.1□□□□□ -1.59
MSH3P20585 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC5.1□□□□□ -1.59
MSH3P20585 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.1□□□□□ -1.59
MSH3P20585 AL671309.1-201ENST00000603750 544 ntBASIC5.1□□□□□ -1.59
MSH3P20585 SDR42E1P1-201ENST00000611327 477 ntBASIC5.1□□□□□ -1.59
MSH3P20585 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC5.1□□□□□ -1.59
MSH3P20585 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.1□□□□□ -1.59
MSH3P20585 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.1□□□□□ -1.59
MSH3P20585 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSH3P20585 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH3P20585 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
MSH3P20585 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 AP000542.2-201ENST00000623199 6179 ntBASIC5.09□□□□□ -1.59
MSH3P20585 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH3P20585 SOCS5P3-201ENST00000425115 1576 ntBASIC5.09□□□□□ -1.59
MSH3P20585 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.09□□□□□ -1.59
MSH3P20585 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
MSH3P20585 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 RN7SKP113-201ENST00000363891 295 ntBASIC5.09□□□□□ -1.59
MSH3P20585 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.09□□□□□ -1.59
MSH3P20585 RNU4-34P-201ENST00000410431 124 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms