Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC6.46□□□□□ -1.38
COL6A1P12109 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC6.46□□□□□ -1.38
COL6A1P12109 AC021678.3-201ENST00000517893 476 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC6.46□□□□□ -1.38
COL6A1P12109 AL512310.9-201ENST00000553311 948 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 AC027807.1-201ENST00000559921 996 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC6.46□□□□□ -1.38
COL6A1P12109 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC6.46□□□□□ -1.38
COL6A1P12109 MTCO2P22-201ENST00000603246 681 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC6.46□□□□□ -1.38
COL6A1P12109 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL6A1P12109 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC6.46□□□□□ -1.38
COL6A1P12109 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL6A1P12109 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL6A1P12109 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
COL6A1P12109 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
COL6A1P12109 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL6A1P12109 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.46□□□□□ -1.38
COL6A1P12109 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
COL6A1P12109 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.45□□□□□ -1.38
COL6A1P12109 MTND4P26-201ENST00000415971 1359 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL6A1P12109 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL6A1P12109 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.45□□□□□ -1.38
COL6A1P12109 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.45□□□□□ -1.38
COL6A1P12109 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
COL6A1P12109 MFSD4BP1-201ENST00000513330 1552 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL6A1P12109 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL6A1P12109 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC6.45□□□□□ -1.38
COL6A1P12109 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.45□□□□□ -1.38
COL6A1P12109 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.45□□□□□ -1.38
COL6A1P12109 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL6A1P12109 RN7SKP103-201ENST00000363848 320 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 RNA5SP211-201ENST00000365516 117 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 RNU6-481P-201ENST00000384194 107 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 AL139128.1-201ENST00000413921 941 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC6.45□□□□□ -1.38
COL6A1P12109 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL6A1P12109 DEFB130D-201ENST00000426866 237 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC6.45□□□□□ -1.38
COL6A1P12109 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC6.45□□□□□ -1.38
COL6A1P12109 AC046176.1-201ENST00000435260 1170 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL6A1P12109 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL6A1P12109 FAR2P1-206ENST00000449736 709 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 AL133217.1-201ENST00000450980 425 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.45□□□□□ -1.38
COL6A1P12109 RPL7P45-201ENST00000455851 743 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC6.45□□□□□ -1.38
COL6A1P12109 MTND4LP3-201ENST00000468320 276 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 CR383656.1-201ENST00000484916 377 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 CYP4F27P-201ENST00000514557 494 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 AC067904.2-201ENST00000517322 1283 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC6.45□□□□□ -1.38
COL6A1P12109 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC6.45□□□□□ -1.38
COL6A1P12109 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC6.45□□□□□ -1.38
COL6A1P12109 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.45□□□□□ -1.38
COL6A1P12109 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC6.45□□□□□ -1.38
COL6A1P12109 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.45□□□□□ -1.38
COL6A1P12109 MIR4646-201ENST00000580775 63 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 AL583856.2-201ENST00000606298 543 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 AL360219.1-201ENST00000610230 366 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC6.45□□□□□ -1.38
COL6A1P12109 AC022306.2-201ENST00000617563 647 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.45□□□□□ -1.38
COL6A1P12109 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC6.45□□□□□ -1.38
COL6A1P12109 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL6A1P12109 ZNF876P-202ENST00000398732 1485 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 NXF4-202ENST00000416098 1465 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL6A1P12109 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.45□□□□□ -1.38
COL6A1P12109 AC132825.1-201ENST00000463573 2247 ntBASIC6.45□□□□□ -1.38
COL6A1P12109 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.45□□□□□ -1.38
COL6A1P12109 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.45□□□□□ -1.38
COL6A1P12109 AC003973.3-201ENST00000624863 2822 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
COL6A1P12109 AC005261.4-201ENST00000600047 1385 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AOX3P-204ENST00000491025 2107 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 AC073365.1-203ENST00000641055 1992 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.44□□□□□ -1.38
COL6A1P12109 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC6.44□□□□□ -1.38
COL6A1P12109 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC6.44□□□□□ -1.38
COL6A1P12109 SNORD8-201ENST00000363915 110 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 FCF1P5-201ENST00000406490 482 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 RNU4-22P-201ENST00000411058 166 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC6.44□□□□□ -1.38
COL6A1P12109 MYL6P5-201ENST00000412707 459 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AL357752.1-201ENST00000412817 349 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC6.44□□□□□ -1.38
COL6A1P12109 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC6.44□□□□□ -1.38
COL6A1P12109 BTF3L4P1-201ENST00000413813 468 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.44□□□□□ -1.38
COL6A1P12109 OR6K4P-201ENST00000423179 955 ntBASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms