Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC7.87□□□□□ -1.15
CUX1P39880 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CUX1P39880 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
CUX1P39880 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC7.87□□□□□ -1.15
CUX1P39880 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC7.87□□□□□ -1.15
CUX1P39880 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC7.87□□□□□ -1.15
CUX1P39880 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CUX1P39880 AL050305.1-201ENST00000399993 1230 ntBASIC7.87□□□□□ -1.15
CUX1P39880 OR1F12-201ENST00000402365 945 ntBASIC7.87□□□□□ -1.15
CUX1P39880 AL158073.1-201ENST00000426848 1104 ntBASIC7.87□□□□□ -1.15
CUX1P39880 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC7.87□□□□□ -1.15
CUX1P39880 NDUFA5P1-201ENST00000433858 341 ntBASIC7.87□□□□□ -1.15
CUX1P39880 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
CUX1P39880 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC7.87□□□□□ -1.15
CUX1P39880 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC7.87□□□□□ -1.15
CUX1P39880 SCARNA10-201ENST00000459255 330 ntBASIC7.87□□□□□ -1.15
CUX1P39880 RPL21P129-201ENST00000491732 478 ntBASIC7.87□□□□□ -1.15
CUX1P39880 AC020593.1-201ENST00000507399 299 ntBASIC7.87□□□□□ -1.15
CUX1P39880 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC7.87□□□□□ -1.15
CUX1P39880 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC7.87□□□□□ -1.15
CUX1P39880 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC7.87□□□□□ -1.15
CUX1P39880 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC7.87□□□□□ -1.15
CUX1P39880 BNIP3P22-201ENST00000593399 556 ntBASIC7.87□□□□□ -1.15
CUX1P39880 AC006453.5-201ENST00000636451 619 ntBASIC7.87□□□□□ -1.15
CUX1P39880 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
CUX1P39880 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC7.87□□□□□ -1.15
CUX1P39880 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
CUX1P39880 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
CUX1P39880 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CUX1P39880 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CUX1P39880 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CUX1P39880 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
CUX1P39880 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
CUX1P39880 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
CUX1P39880 CASKP1-201ENST00000412870 582 ntBASIC7.86□□□□□ -1.15
CUX1P39880 RPS29P17-201ENST00000430795 166 ntBASIC7.86□□□□□ -1.15
CUX1P39880 RN7SL98P-201ENST00000462271 300 ntBASIC7.86□□□□□ -1.15
CUX1P39880 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC7.86□□□□□ -1.15
CUX1P39880 NIFKP7-201ENST00000503365 834 ntBASIC7.86□□□□□ -1.15
CUX1P39880 AC025884.1-201ENST00000556034 378 ntBASIC7.86□□□□□ -1.15
CUX1P39880 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC7.86□□□□□ -1.15
CUX1P39880 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC7.86□□□□□ -1.15
CUX1P39880 PRELID3BP3-201ENST00000584963 545 ntBASIC7.86□□□□□ -1.15
CUX1P39880 AC093227.2-201ENST00000589357 285 ntBASIC7.86□□□□□ -1.15
CUX1P39880 AP001160.4-201ENST00000596971 382 ntBASIC7.86□□□□□ -1.15
CUX1P39880 OR7A19P-201ENST00000608051 733 ntBASIC7.86□□□□□ -1.15
CUX1P39880 AL023881.1-201ENST00000621088 301 ntBASIC7.86□□□□□ -1.15
CUX1P39880 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
CUX1P39880 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC7.86□□□□□ -1.15
CUX1P39880 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC7.85□□□□□ -1.15
CUX1P39880 AL121657.1-201ENST00000327215 531 ntBASIC7.85□□□□□ -1.15
CUX1P39880 SCP2-206ENST00000430330 938 ntTSL 2 BASIC7.85□□□□□ -1.15
CUX1P39880 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
CUX1P39880 H2AFZP5-201ENST00000446960 382 ntBASIC7.85□□□□□ -1.15
CUX1P39880 EIF4A2P4-201ENST00000458691 1196 ntBASIC7.85□□□□□ -1.15
CUX1P39880 RPS27AP16-201ENST00000492222 470 ntBASIC7.85□□□□□ -1.15
CUX1P39880 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
CUX1P39880 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC7.85□□□□□ -1.15
CUX1P39880 ARL6IP1P1-201ENST00000545836 610 ntBASIC7.85□□□□□ -1.15
CUX1P39880 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC7.85□□□□□ -1.15
CUX1P39880 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC7.85□□□□□ -1.15
CUX1P39880 ARF4P1-201ENST00000605447 541 ntBASIC7.85□□□□□ -1.15
CUX1P39880 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC7.85□□□□□ -1.15
CUX1P39880 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC7.85□□□□□ -1.15
CUX1P39880 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC7.85□□□□□ -1.15
CUX1P39880 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC7.85□□□□□ -1.15
CUX1P39880 AL031119.1-201ENST00000404707 1879 ntBASIC7.85□□□□□ -1.15
CUX1P39880 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC7.85□□□□□ -1.15
CUX1P39880 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
CUX1P39880 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC7.84□□□□□ -1.15
CUX1P39880 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.15
CUX1P39880 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.15
CUX1P39880 RN7SKP280-201ENST00000364196 304 ntBASIC7.84□□□□□ -1.15
CUX1P39880 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC7.84□□□□□ -1.15
CUX1P39880 RN7SL303P-201ENST00000469773 251 ntBASIC7.84□□□□□ -1.15
CUX1P39880 AC090058.1-201ENST00000498788 435 ntBASIC7.84□□□□□ -1.15
CUX1P39880 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC7.84□□□□□ -1.15
CUX1P39880 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC7.84□□□□□ -1.15
CUX1P39880 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC7.84□□□□□ -1.15
CUX1P39880 AC090948.2-201ENST00000607363 564 ntBASIC7.84□□□□□ -1.15
CUX1P39880 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC7.84□□□□□ -1.15
CUX1P39880 MIR492-201ENST00000638676 116 ntBASIC7.84□□□□□ -1.15
CUX1P39880 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC7.84□□□□□ -1.15
CUX1P39880 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC7.84□□□□□ -1.15
CUX1P39880 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC7.84□□□□□ -1.15
CUX1P39880 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
CUX1P39880 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.15
CUX1P39880 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC7.84□□□□□ -1.15
CUX1P39880 IQCB2P-201ENST00000401788 1633 ntBASIC7.84□□□□□ -1.15
CUX1P39880 ICE2P1-201ENST00000512800 1849 ntBASIC7.84□□□□□ -1.15
CUX1P39880 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC7.84□□□□□ -1.15
CUX1P39880 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC7.83□□□□□ -1.16
CUX1P39880 AL121950.1-201ENST00000624993 2077 ntBASIC7.83□□□□□ -1.16
CUX1P39880 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
CUX1P39880 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC7.83□□□□□ -1.16
CUX1P39880 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC7.83□□□□□ -1.16
CUX1P39880 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CUX1P39880 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CUX1P39880 AL451139.1-201ENST00000434718 346 ntBASIC7.83□□□□□ -1.16
CUX1P39880 OR52E3P-201ENST00000452083 936 ntBASIC7.83□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms