Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 H2AFZP5-201ENST00000446960 382 ntBASIC6.14□□□□□ -1.43
COL18A1P39060 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC6.14□□□□□ -1.43
COL18A1P39060 AL049830.4-201ENST00000555149 351 ntBASIC6.14□□□□□ -1.43
COL18A1P39060 AC011477.5-201ENST00000586571 259 ntBASIC6.14□□□□□ -1.43
COL18A1P39060 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC6.14□□□□□ -1.43
COL18A1P39060 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC6.14□□□□□ -1.43
COL18A1P39060 BX005214.3-202ENST00000619809 325 ntBASIC6.14□□□□□ -1.43
COL18A1P39060 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.14□□□□□ -1.43
COL18A1P39060 OR8B1P-202ENST00000641132 1178 ntBASIC6.14□□□□□ -1.43
COL18A1P39060 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC6.14□□□□□ -1.43
COL18A1P39060 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
COL18A1P39060 TRIM51GP-201ENST00000534741 1350 ntBASIC6.14□□□□□ -1.43
COL18A1P39060 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL18A1P39060 PRNCR1-201ENST00000635449 12727 ntBASIC6.14□□□□□ -1.43
COL18A1P39060 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
COL18A1P39060 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL18A1P39060 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL18A1P39060 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL18A1P39060 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.13□□□□□ -1.43
COL18A1P39060 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL18A1P39060 AL583835.1-201ENST00000399570 407 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 E2F6P2-201ENST00000420708 748 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC6.13□□□□□ -1.43
COL18A1P39060 DHFRP3-201ENST00000455595 559 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 RN7SL691P-201ENST00000494487 301 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC6.13□□□□□ -1.43
COL18A1P39060 RPL23AP53-201ENST00000521854 457 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC6.13□□□□□ -1.43
COL18A1P39060 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC6.13□□□□□ -1.43
COL18A1P39060 AC025884.1-201ENST00000556034 378 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC6.13□□□□□ -1.43
COL18A1P39060 ARF4P1-201ENST00000605447 541 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AC073137.1-201ENST00000605636 634 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 MIR6891-201ENST00000618788 93 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AC009120.7-201ENST00000623452 780 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AC008785.1-201ENST00000624475 456 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL18A1P39060 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.13□□□□□ -1.43
COL18A1P39060 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL18A1P39060 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL18A1P39060 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL18A1P39060 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL18A1P39060 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC6.13□□□□□ -1.43
COL18A1P39060 AL356095.1-201ENST00000417217 199 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC6.13□□□□□ -1.43
COL18A1P39060 AC092162.1-201ENST00000432828 434 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL18A1P39060 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC6.13□□□□□ -1.43
COL18A1P39060 ABCC13-202ENST00000463099 3842 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AC090142.1-201ENST00000465776 462 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 RPS27AP16-201ENST00000492222 470 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 RN7SL810P-201ENST00000493031 276 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC6.13□□□□□ -1.43
COL18A1P39060 AP000827.1-201ENST00000527814 258 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AC005868.1-201ENST00000536421 331 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL18A1P39060 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC6.13□□□□□ -1.43
COL18A1P39060 FKBP1BP1-201ENST00000553366 325 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC6.13□□□□□ -1.43
COL18A1P39060 RPL7P50-201ENST00000600588 727 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 AC090948.2-201ENST00000607363 564 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC6.13□□□□□ -1.43
COL18A1P39060 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.13□□□□□ -1.43
COL18A1P39060 AL117339.4-201ENST00000608335 7063 ntBASIC6.13□□□□□ -1.43
COL18A1P39060 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL18A1P39060 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
COL18A1P39060 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC6.12□□□□□ -1.43
COL18A1P39060 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL18A1P39060 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL18A1P39060 OR51H2P-202ENST00000641424 3046 ntBASIC6.12□□□□□ -1.43
COL18A1P39060 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.12□□□□□ -1.43
COL18A1P39060 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL18A1P39060 ST7-212ENST00000422922 1887 ntTSL 5 BASIC6.12□□□□□ -1.43
COL18A1P39060 RN7SKP280-201ENST00000364196 304 ntBASIC6.12□□□□□ -1.43
COL18A1P39060 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC6.12□□□□□ -1.43
COL18A1P39060 NFYAP1-201ENST00000431953 972 ntBASIC6.12□□□□□ -1.43
COL18A1P39060 RPL34P6-201ENST00000432390 345 ntBASIC6.12□□□□□ -1.43
COL18A1P39060 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC6.12□□□□□ -1.43
COL18A1P39060 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC6.12□□□□□ -1.43
COL18A1P39060 MRPL35P2-201ENST00000448009 511 ntBASIC6.12□□□□□ -1.43
COL18A1P39060 NUTF2P3-201ENST00000448540 384 ntBASIC6.12□□□□□ -1.43
COL18A1P39060 SNORA84-201ENST00000459229 133 ntBASIC6.12□□□□□ -1.43
COL18A1P39060 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL18A1P39060 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC6.12□□□□□ -1.43
COL18A1P39060 MIR4429-201ENST00000580105 73 ntBASIC6.12□□□□□ -1.43
COL18A1P39060 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL18A1P39060 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL18A1P39060 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL18A1P39060 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL18A1P39060 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL18A1P39060 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL18A1P39060 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL18A1P39060 AL034370.1-201ENST00000397254 1590 ntBASIC6.12□□□□□ -1.43
COL18A1P39060 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC6.12□□□□□ -1.43
COL18A1P39060 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.12□□□□□ -1.43
COL18A1P39060 AL033543.1-201ENST00000623440 13454 ntBASIC6.12□□□□□ -1.43
COL18A1P39060 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL18A1P39060 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL18A1P39060 MIR383-201ENST00000362257 73 ntBASIC6.11□□□□□ -1.43
COL18A1P39060 RNU1-64P-201ENST00000365443 163 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms