Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 OR5T3-201ENST00000303059 1023 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 RNU6-225P-201ENST00000384613 103 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AL136116.2-201ENST00000404020 785 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 MTND3P20-201ENST00000407663 186 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 NPM1P40-201ENST00000412758 733 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AL590139.1-201ENST00000416267 400 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 DDX39BP1-205ENST00000422507 192 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 RIMKLBP2-201ENST00000424737 654 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 VTI1BP4-201ENST00000427516 527 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AL138878.2-201ENST00000440581 1241 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 TRY2P-201ENST00000448860 689 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 RPL5P13-201ENST00000462840 709 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 RN7SL738P-201ENST00000470264 297 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 RPL7P16-201ENST00000479738 738 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 BTG4P1-201ENST00000510421 183 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC108157.1-201ENST00000510511 539 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 NPM1P35-201ENST00000533043 868 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC134349.2-201ENST00000535136 910 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AP005403.1-201ENST00000579720 229 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC135803.1-201ENST00000608748 565 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AL731566.2-201ENST00000618971 317 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AC007996.1-201ENST00000620414 2821 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.15□□□□□ -1.58
PCDHGA1Q9Y5H4 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
PCDHGA1Q9Y5H4 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
PCDHGA1Q9Y5H4 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
PCDHGA1Q9Y5H4 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
PCDHGA1Q9Y5H4 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.15□□□□□ -1.58
PCDHGA1Q9Y5H4 AL121886.1-201ENST00000358609 435 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 RNVU1-6-201ENST00000364688 164 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 SNORA68.2-201ENST00000391263 128 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 OR4K12P-201ENST00000406538 961 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 COX6B1P1-201ENST00000415962 213 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AC006065.1-201ENST00000422539 802 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 TRIM60P13-201ENST00000432350 1283 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 MTND2P2-201ENST00000434633 945 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 SCAND3P1-201ENST00000439854 1060 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 RN7SL346P-201ENST00000491561 294 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AC021146.7-201ENST00000509604 775 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 RNU6-760P-201ENST00000516078 97 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 RNA5SP373-201ENST00000517271 95 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AP004607.2-201ENST00000533949 322 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AC137627.1-201ENST00000545761 289 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AC234771.5-201ENST00000600161 514 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AC087283.1-201ENST00000604029 1074 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AC012467.1-201ENST00000607740 256 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 uc_338.18-201ENST00000615451 175 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 AC009032.1-201ENST00000617574 431 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 OR4F13P-202ENST00000560066 2054 ntBASIC5.15□□□□□ -1.59
PCDHGA1Q9Y5H4 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms