Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 EI24P3-201ENST00000399046 1062 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC136624.1-201ENST00000400791 413 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 RN7SKP216-201ENST00000411050 312 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 GTF2IP5-201ENST00000414608 731 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 RPL35AP3-201ENST00000414680 288 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC008173.1-201ENST00000418901 264 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC234781.4-201ENST00000419384 244 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 RNGTTP1-201ENST00000420965 728 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC126120.1-201ENST00000431082 470 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 FABP5P3-201ENST00000437960 408 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 MED6P1-201ENST00000439659 713 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 MTCO1P53-201ENST00000441633 699 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AL358794.1-201ENST00000445689 381 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC073909.1-201ENST00000447112 999 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 LRRC37A14P-201ENST00000452297 462 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC020699.1-201ENST00000505161 445 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC105384.2-201ENST00000508433 640 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 PRELID3BP5-201ENST00000508612 460 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 HPRT1P1-201ENST00000509498 657 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 OR8K4P-201ENST00000534608 872 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AL390726.5-202ENST00000564800 256 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 SAMMSON-227ENST00000642114 1199 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 MTND5P23-201ENST00000430812 1655 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
VPS4AQ9UN37 AL138820.1-201ENST00000617901 5305 ntBASIC5.5□□□□□ -1.53
VPS4AQ9UN37 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 C4BPAP1-201ENST00000415474 1893 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 RNA5SP46-201ENST00000362370 120 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 RNA5SP105-201ENST00000391123 113 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AL034403.1-201ENST00000399414 885 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC016739.1-201ENST00000405359 345 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 MTATP6P20-201ENST00000414147 562 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AL592310.1-201ENST00000414330 671 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 EIF4A1P1-201ENST00000420241 934 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC093084.1-201ENST00000424233 687 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 DEFB130D-201ENST00000426866 237 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 DEFA9P-201ENST00000433042 285 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 CYCSP42-201ENST00000450823 238 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AL645937.3-201ENST00000453647 936 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 MTCO2P6-201ENST00000463134 685 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 RN7SL269P-201ENST00000467795 305 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 GAPDHP71-201ENST00000511530 1003 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC074087.1-201ENST00000512059 724 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC108120.2-201ENST00000512973 294 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 SNORA19.3-201ENST00000516165 130 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 RN7SKP287-201ENST00000516546 266 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC091163.3-201ENST00000518269 1144 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 LRRC34P1-201ENST00000542742 915 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS4AQ9UN37 AL356801.1-201ENST00000559320 294 ntBASIC5.49□□□□□ -1.53
VPS4AQ9UN37 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms