Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 OR4A46P-201ENST00000527255 933 ntBASIC4.53□□□□□ -1.68
SKA3Q8IX90 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SKA3Q8IX90 OR11J2P-201ENST00000555298 907 ntBASIC4.53□□□□□ -1.68
SKA3Q8IX90 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 AL008729.2-201ENST00000606393 473 ntBASIC4.53□□□□□ -1.68
SKA3Q8IX90 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SKA3Q8IX90 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
SKA3Q8IX90 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SKA3Q8IX90 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.53□□□□□ -1.69
SKA3Q8IX90 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
SKA3Q8IX90 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 PANDAR-201ENST00000629595 1506 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 CIR1P2-201ENST00000514821 1342 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SKA3Q8IX90 MIR323B-201ENST00000385269 82 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 MARK2P12-201ENST00000420129 585 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC009238.2-201ENST00000431026 355 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC097523.2-201ENST00000435551 652 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 CNOT7P2-201ENST00000441051 832 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AURKAPS1-201ENST00000451805 1212 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AL389915.2-201ENST00000454576 441 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 RN7SL222P-201ENST00000476452 299 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 RPS18P6-201ENST00000476880 458 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC097173.1-201ENST00000505862 819 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 RNA5SP92-201ENST00000516437 110 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 RNA5SP360-201ENST00000516555 118 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 BNIP3P35-201ENST00000604530 490 ntBASIC4.52□□□□□ -1.69
SKA3Q8IX90 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.52□□□□□ -1.69
SKA3Q8IX90 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 AL390316.1-201ENST00000406279 553 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 RAB9AP4-201ENST00000415230 609 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 RPL36AP10-201ENST00000421785 322 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 AL139148.1-201ENST00000427122 680 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 AC046176.1-201ENST00000435260 1170 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 RN7SL629P-201ENST00000489622 285 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 AGGF1P3-201ENST00000493675 1213 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 SNRPCP2-201ENST00000504370 475 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 HMGB3P16-201ENST00000508037 287 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 RNA5SP34-201ENST00000516887 130 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 NPM1P52-201ENST00000518264 846 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms