Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL162431.4-201ENST00000604674 411 ntBASIC4.82□□□□□ -1.64
SOX3P41225 HMGB1P51-201ENST00000605166 638 ntBASIC4.82□□□□□ -1.64
SOX3P41225 AC009163.6-201ENST00000612367 342 ntBASIC4.82□□□□□ -1.64
SOX3P41225 MIR7155-201ENST00000615925 56 ntBASIC4.82□□□□□ -1.64
SOX3P41225 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.82□□□□□ -1.64
SOX3P41225 MIR6839-201ENST00000620425 113 ntBASIC4.82□□□□□ -1.64
SOX3P41225 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SOX3P41225 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SOX3P41225 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.82□□□□□ -1.64
SOX3P41225 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SOX3P41225 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SOX3P41225 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.82□□□□□ -1.64
SOX3P41225 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SOX3P41225 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SOX3P41225 AC112255.1-201ENST00000624070 2493 ntBASIC4.82□□□□□ -1.64
SOX3P41225 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.81□□□□□ -1.64
SOX3P41225 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC4.81□□□□□ -1.64
SOX3P41225 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
SOX3P41225 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 AL022393.1-201ENST00000625142 1677 ntBASIC4.81□□□□□ -1.64
SOX3P41225 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SOX3P41225 OR9G4-201ENST00000302957 984 ntBASIC4.81□□□□□ -1.64
SOX3P41225 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 RNA5SP90-201ENST00000364801 99 ntBASIC4.81□□□□□ -1.64
SOX3P41225 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 OR8V1P-201ENST00000395193 873 ntBASIC4.81□□□□□ -1.64
SOX3P41225 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 CCNB2P1-201ENST00000399411 1150 ntBASIC4.81□□□□□ -1.64
SOX3P41225 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
SOX3P41225 RN7SKP16-201ENST00000410180 299 ntBASIC4.81□□□□□ -1.64
SOX3P41225 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.81□□□□□ -1.64
SOX3P41225 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC4.81□□□□□ -1.64
SOX3P41225 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 RPL17P35-201ENST00000432217 549 ntBASIC4.81□□□□□ -1.64
SOX3P41225 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.81□□□□□ -1.64
SOX3P41225 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.81□□□□□ -1.64
SOX3P41225 CLUHP1-201ENST00000435012 1190 ntBASIC4.81□□□□□ -1.64
SOX3P41225 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.81□□□□□ -1.64
SOX3P41225 RPS29P10-201ENST00000439197 166 ntBASIC4.81□□□□□ -1.64
SOX3P41225 Z99127.2-201ENST00000441426 334 ntBASIC4.81□□□□□ -1.64
SOX3P41225 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.81□□□□□ -1.64
SOX3P41225 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.81□□□□□ -1.64
SOX3P41225 STRADBP1-201ENST00000478954 1281 ntBASIC4.81□□□□□ -1.64
SOX3P41225 RPL7P41-201ENST00000485823 957 ntBASIC4.81□□□□□ -1.64
SOX3P41225 RPL32P9-201ENST00000487963 407 ntBASIC4.81□□□□□ -1.64
SOX3P41225 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.81□□□□□ -1.64
SOX3P41225 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.81□□□□□ -1.64
SOX3P41225 RNU6-513P-201ENST00000516104 104 ntBASIC4.81□□□□□ -1.64
SOX3P41225 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC4.81□□□□□ -1.64
SOX3P41225 AC022360.1-201ENST00000521058 340 ntBASIC4.81□□□□□ -1.64
SOX3P41225 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC4.81□□□□□ -1.64
SOX3P41225 AC090079.2-201ENST00000575289 768 ntBASIC4.81□□□□□ -1.64
SOX3P41225 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 AC008814.1-201ENST00000603797 406 ntBASIC4.81□□□□□ -1.64
SOX3P41225 OR4H6P-202ENST00000603819 340 ntBASIC4.81□□□□□ -1.64
SOX3P41225 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 AC015922.4-201ENST00000612568 690 ntBASIC4.81□□□□□ -1.64
SOX3P41225 AC037198.3-201ENST00000616754 526 ntBASIC4.81□□□□□ -1.64
SOX3P41225 AC099494.2-201ENST00000623371 978 ntBASIC4.81□□□□□ -1.64
SOX3P41225 AC135068.12-201ENST00000637370 931 ntBASIC4.81□□□□□ -1.64
SOX3P41225 LINC01739-205ENST00000641890 573 ntBASIC4.81□□□□□ -1.64
SOX3P41225 AC073869.10-201ENST00000642016 354 ntBASIC4.81□□□□□ -1.64
SOX3P41225 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
SOX3P41225 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.81□□□□□ -1.64
SOX3P41225 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SOX3P41225 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SOX3P41225 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.8□□□□□ -1.64
SOX3P41225 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SOX3P41225 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SOX3P41225 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SOX3P41225 RN7SKP153-201ENST00000365026 316 ntBASIC4.8□□□□□ -1.64
SOX3P41225 MIR421-201ENST00000365696 85 ntBASIC4.8□□□□□ -1.64
SOX3P41225 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.8□□□□□ -1.64
SOX3P41225 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SOX3P41225 ST13P16-201ENST00000401760 781 ntBASIC4.8□□□□□ -1.64
SOX3P41225 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.8□□□□□ -1.64
SOX3P41225 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.8□□□□□ -1.64
SOX3P41225 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.8□□□□□ -1.64
SOX3P41225 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.8□□□□□ -1.64
SOX3P41225 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms