Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
MSX2P35548 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 NACA3P-201ENST00000359690 648 ntBASIC5.7□□□□□ -1.5
MSX2P35548 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.7□□□□□ -1.5
MSX2P35548 SNORA7A-201ENST00000384765 139 ntBASIC5.7□□□□□ -1.5
MSX2P35548 RNU6-1320P-201ENST00000390838 107 ntBASIC5.7□□□□□ -1.5
MSX2P35548 RNU6-1269P-201ENST00000391139 107 ntBASIC5.7□□□□□ -1.5
MSX2P35548 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 RPL26P37-201ENST00000411983 438 ntBASIC5.7□□□□□ -1.5
MSX2P35548 NPM1P11-201ENST00000417106 855 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 BTF3P9-201ENST00000418784 283 ntBASIC5.7□□□□□ -1.5
MSX2P35548 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX2P35548 AL049610.1-201ENST00000423374 372 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC012519.1-201ENST00000424588 610 ntBASIC5.7□□□□□ -1.5
MSX2P35548 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.7□□□□□ -1.5
MSX2P35548 ETF1P3-201ENST00000430422 1160 ntBASIC5.7□□□□□ -1.5
MSX2P35548 BX276092.6-201ENST00000430476 250 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX2P35548 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 AL845321.1-201ENST00000444603 348 ntBASIC5.7□□□□□ -1.5
MSX2P35548 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.7□□□□□ -1.5
MSX2P35548 PPIA-203ENST00000451562 544 ntTSL 2 BASIC5.7□□□□□ -1.5
MSX2P35548 AC073476.1-201ENST00000452854 407 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AL133351.3-201ENST00000454998 193 ntBASIC5.7□□□□□ -1.5
MSX2P35548 CEACAMP11-201ENST00000455211 583 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.7□□□□□ -1.5
MSX2P35548 BX276092.8-201ENST00000455722 250 ntBASIC5.7□□□□□ -1.5
MSX2P35548 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 RNU6-599P-201ENST00000459383 107 ntBASIC5.7□□□□□ -1.5
MSX2P35548 RNU6-1193P-201ENST00000459461 107 ntBASIC5.7□□□□□ -1.5
MSX2P35548 RPL30P6-201ENST00000475925 342 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC092045.1-201ENST00000495716 1231 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC113347.3-201ENST00000509113 148 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC114940.1-201ENST00000512162 1265 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC022447.1-201ENST00000515358 464 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX2P35548 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 AC113191.1-201ENST00000517759 403 ntBASIC5.7□□□□□ -1.5
MSX2P35548 MTND4LP26-201ENST00000518144 282 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.7□□□□□ -1.5
MSX2P35548 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX2P35548 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 AADACP1-206ENST00000561502 1193 ntBASIC5.7□□□□□ -1.5
MSX2P35548 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX2P35548 AC006362.1-201ENST00000567392 174 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 SNORD39.2-201ENST00000579995 76 ntBASIC5.7□□□□□ -1.5
MSX2P35548 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 AP002884.5-201ENST00000595053 1132 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC073544.2-201ENST00000601155 540 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC012175.1-201ENST00000603755 531 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AL135786.2-201ENST00000608422 615 ntBASIC5.7□□□□□ -1.5
MSX2P35548 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX2P35548 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
MSX2P35548 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 AC025588.4-201ENST00000615802 908 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC139769.3-201ENST00000618383 175 ntBASIC5.7□□□□□ -1.5
MSX2P35548 U6.42-201ENST00000618440 107 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC005899.6-201ENST00000620729 297 ntBASIC5.7□□□□□ -1.5
MSX2P35548 RNU6-368P-201ENST00000620928 107 ntBASIC5.7□□□□□ -1.5
MSX2P35548 RNU6-538P-201ENST00000622329 107 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AL359757.1-201ENST00000623176 255 ntBASIC5.7□□□□□ -1.5
MSX2P35548 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.5
MSX2P35548 AC005609.4-201ENST00000625071 447 ntBASIC5.7□□□□□ -1.5
MSX2P35548 DRG1-207ENST00000629688 309 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX2P35548 AC079776.5-201ENST00000641920 211 ntBASIC5.7□□□□□ -1.5
MSX2P35548 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
MSX2P35548 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.7□□□□□ -1.5
MSX2P35548 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX2P35548 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSX2P35548 NEPNP-201ENST00000404786 1371 ntBASIC5.69□□□□□ -1.5
MSX2P35548 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX2P35548 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 AC130304.1-201ENST00000622942 2385 ntBASIC5.69□□□□□ -1.5
MSX2P35548 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX2P35548 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX2P35548 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 AC003045.1-201ENST00000398779 713 ntBASIC5.69□□□□□ -1.5
MSX2P35548 VIM2P-201ENST00000402383 1294 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.69□□□□□ -1.5
MSX2P35548 DPPA2P2-201ENST00000418220 897 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms