Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 HMGB1P49-201ENST00000418882 569 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC246680.2-201ENST00000422106 389 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 OR5M12P-201ENST00000423388 929 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 OR6K5P-201ENST00000447050 945 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC092685.1-201ENST00000447960 1243 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 Z99714.1-201ENST00000450463 807 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AL450023.1-201ENST00000450868 751 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AL606490.1-201ENST00000452266 765 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 RPS6P2-201ENST00000454208 705 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AL445687.2-201ENST00000458156 728 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AL355032.1-201ENST00000472981 438 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 RN7SL583P-201ENST00000475692 287 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 OR2AO1P-201ENST00000476497 403 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC006539.1-201ENST00000481419 501 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC105384.2-201ENST00000508433 640 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC090424.1-201ENST00000535243 736 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 EMP1-206ENST00000537612 505 ntTSL 3 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC008126.1-201ENST00000549019 480 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 MTCYBP27-201ENST00000555160 670 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 MIR1269B-201ENST00000580405 75 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 MIR4433B-201ENST00000581329 102 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 IMMP1LP3-201ENST00000604197 224 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 FRG1HP-204ENST00000617940 757 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 AC241377.1-201ENST00000619797 406 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 MIR8080-201ENST00000622224 89 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 MIR6719-201ENST00000622428 87 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.91□□□□□ -1.46
TDP1Q9NUW8 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
TDP1Q9NUW8 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 ZNF733P-202ENST00000444809 1573 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 RNU4-51P-201ENST00000364206 140 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AL451142.1-201ENST00000375867 775 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 RNU4-31P-201ENST00000384211 141 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 MIR105-2-201ENST00000385083 81 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 MIR1286-201ENST00000408112 78 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 RNU4-64P-201ENST00000410795 131 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 MTND4LP17-201ENST00000414607 293 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 PTP4A1P1-201ENST00000420539 515 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 OR5W1P-201ENST00000423705 938 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AL627308.1-201ENST00000435693 821 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 RANP1-206ENST00000455094 651 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 OSTCP1-201ENST00000455507 450 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AC011225.1-201ENST00000457751 369 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 RPS23P2-201ENST00000463671 415 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AC011037.1-201ENST00000483964 558 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AC004815.1-201ENST00000484185 331 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 OR5AK3P-201ENST00000527486 1297 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AL121594.2-201ENST00000541658 472 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 OSBPL9P5-201ENST00000542581 171 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AC023050.2-201ENST00000544968 387 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 ZNF321P-202ENST00000550843 495 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 FKBP1AP1-201ENST00000594588 318 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AL139344.1-201ENST00000605228 195 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AC013468.1-201ENST00000608680 598 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AL138478.1-201ENST00000612252 832 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AC084782.3-201ENST00000612282 578 ntBASIC5.9□□□□□ -1.46
TDP1Q9NUW8 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
TDP1Q9NUW8 AC005840.5-201ENST00000619166 599 ntBASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms