Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6□□□□□ -1.45
USP39Q53GS9 AC002069.2-201ENST00000603580 883 ntBASIC6□□□□□ -1.45
USP39Q53GS9 HIRAP1-201ENST00000605318 787 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AL513477.2-201ENST00000607858 568 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6□□□□□ -1.45
USP39Q53GS9 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6□□□□□ -1.45
USP39Q53GS9 PART1_2.1-201ENST00000612397 250 ntBASIC6□□□□□ -1.45
USP39Q53GS9 U1.25-201ENST00000614085 162 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AC116165.2-201ENST00000616705 206 ntBASIC6□□□□□ -1.45
USP39Q53GS9 U1.31-201ENST00000620022 160 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AC093648.1-201ENST00000623546 606 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AL390318.1-201ENST00000624564 687 ntBASIC6□□□□□ -1.45
USP39Q53GS9 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC6□□□□□ -1.45
USP39Q53GS9 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6□□□□□ -1.45
USP39Q53GS9 MSL3P1-202ENST00000440028 1468 ntBASIC6□□□□□ -1.45
USP39Q53GS9 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.99□□□□□ -1.45
USP39Q53GS9 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.99□□□□□ -1.45
USP39Q53GS9 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.99□□□□□ -1.45
USP39Q53GS9 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.99□□□□□ -1.45
USP39Q53GS9 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.99□□□□□ -1.45
USP39Q53GS9 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC5.99□□□□□ -1.45
USP39Q53GS9 RN7SKP162-201ENST00000363605 345 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 HMGB1P20-201ENST00000402555 677 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 AL121835.1-201ENST00000404250 354 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 RN7SKP151-201ENST00000410230 316 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 NPM1P4-201ENST00000414095 812 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.99□□□□□ -1.45
USP39Q53GS9 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.99□□□□□ -1.45
USP39Q53GS9 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.99□□□□□ -1.45
USP39Q53GS9 SPRYD7P1-201ENST00000443861 570 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AC092691.2-201ENST00000461787 803 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.99□□□□□ -1.45
USP39Q53GS9 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AL035690.1-201ENST00000490892 383 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 OR9N1P-202ENST00000494289 481 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 AC008629.2-201ENST00000503783 483 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.99□□□□□ -1.45
USP39Q53GS9 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.99□□□□□ -1.45
USP39Q53GS9 DUTP7-201ENST00000507982 486 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.99□□□□□ -1.45
USP39Q53GS9 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.99□□□□□ -1.45
USP39Q53GS9 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.99□□□□□ -1.45
USP39Q53GS9 OR4A17P-201ENST00000526032 904 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 MTCYBP41-201ENST00000528913 1123 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 HMGN2P36-201ENST00000529541 409 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.99□□□□□ -1.45
USP39Q53GS9 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AC015802.2-201ENST00000589690 189 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 AC079610.2-201ENST00000604818 690 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 AC010245.2-201ENST00000606908 1167 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AC067852.7-201ENST00000623270 535 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC5.99□□□□□ -1.45
USP39Q53GS9 AC087565.3-203ENST00000641018 837 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.99□□□□□ -1.45
USP39Q53GS9 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
USP39Q53GS9 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
USP39Q53GS9 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 MTCO1P7-201ENST00000419523 1542 ntBASIC5.99□□□□□ -1.45
USP39Q53GS9 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
USP39Q53GS9 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.98□□□□□ -1.45
USP39Q53GS9 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.98□□□□□ -1.45
USP39Q53GS9 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.98□□□□□ -1.45
USP39Q53GS9 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms