Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC108161.1-201ENST00000461060 402 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 RPS3AP41-201ENST00000462701 778 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC091544.1-201ENST00000484702 348 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC092593.2-201ENST00000513866 913 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 HMGN1P9-201ENST00000515212 298 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC097486.1-201ENST00000515331 210 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 SCARNA20.4-201ENST00000516969 131 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC012400.1-201ENST00000518452 381 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC020937.1-201ENST00000519677 1013 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 THAP12P4-201ENST00000528321 2266 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC008126.1-201ENST00000549019 480 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC073111.2-201ENST00000605657 1075 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AL023583.1-201ENST00000607518 1143 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC244107.2-201ENST00000611773 76 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC015922.4-201ENST00000612568 690 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC091953.3-201ENST00000623220 236 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC106730.3-201ENST00000624568 641 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC003973.3-201ENST00000624863 2822 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC093849.1-201ENST00000563631 2209 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC100757.1-201ENST00000616872 1835 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC079298.1-201ENST00000625026 1619 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 RNU4-39P-201ENST00000362455 127 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 RNU1-146P-201ENST00000364015 165 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 ST13P16-201ENST00000401760 781 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AL049745.1-201ENST00000433953 286 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 SNRPFP2-201ENST00000440710 251 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 Z99127.2-201ENST00000441426 334 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 RPS3AP53-201ENST00000454716 778 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC097484.1-201ENST00000471148 389 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 HIGD1AP5-201ENST00000529959 259 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 OR11H3P-201ENST00000554547 982 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC005084.1-201ENST00000605160 304 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC007786.3-201ENST00000615154 596 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 MIR6133-201ENST00000617057 108 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC015660.5-201ENST00000623238 564 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC091905.4-201ENST00000623432 202 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AC135068.5-201ENST00000624197 983 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AL163152.1-201ENST00000642001 374 ntBASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC3Q9BQI4 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms