Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CREM-230ENST00000474931 626 ntTSL 2 BASIC6.23□□□□□ -1.41
COL18A1P39060 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 MIR92B-201ENST00000607575 96 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 AC024941.1-201ENST00000612250 334 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 CARF-203ENST00000414439 2099 ntTSL 2 BASIC6.23□□□□□ -1.41
COL18A1P39060 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC6.23□□□□□ -1.41
COL18A1P39060 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 AL731532.1-201ENST00000623972 4236 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
COL18A1P39060 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 ACTR3P2-201ENST00000439585 1257 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 AL162591.2-201ENST00000449634 317 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 PPM1AP1-201ENST00000502740 1135 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 CARD16-203ENST00000525374 503 ntTSL 3 BASIC6.23□□□□□ -1.41
COL18A1P39060 AGGF1P9-201ENST00000561884 913 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 AC034229.2-201ENST00000566945 2508 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 AC006453.5-201ENST00000636451 619 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL18A1P39060 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL18A1P39060 AL121950.1-201ENST00000624993 2077 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL18A1P39060 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC6.22□□□□□ -1.41
COL18A1P39060 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
COL18A1P39060 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL18A1P39060 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL18A1P39060 AC012213.2-201ENST00000562917 4597 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 RNA5SP453-201ENST00000362503 119 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 SNORA48.7-201ENST00000391302 135 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 AL158073.1-201ENST00000426848 1104 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 EEF1A1P1-201ENST00000447052 739 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 OR52E3P-201ENST00000452083 936 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 AC073073.1-201ENST00000493920 463 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 IGKV3OR22-2-201ENST00000517943 313 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 MIR492-201ENST00000638676 116 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL18A1P39060 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
COL18A1P39060 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL18A1P39060 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
COL18A1P39060 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL18A1P39060 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
COL18A1P39060 AC093829.1-201ENST00000506662 1618 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 UGT2B26P-201ENST00000508672 1613 ntBASIC6.22□□□□□ -1.41
COL18A1P39060 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL18A1P39060 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.21□□□□□ -1.41
COL18A1P39060 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.21□□□□□ -1.41
COL18A1P39060 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL18A1P39060 RNA5SP317-201ENST00000410176 116 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 RNA5SP311-201ENST00000411290 116 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 COX5BP7-201ENST00000414780 274 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 RPS29P17-201ENST00000430795 166 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 AL451139.1-201ENST00000434718 346 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC6.21□□□□□ -1.41
COL18A1P39060 AC034236.1-201ENST00000469891 373 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 AC022034.3-201ENST00000471393 478 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 MTCO1P35-201ENST00000515270 228 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 RNA5SP315-201ENST00000516340 116 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 RNA5SP312-201ENST00000517068 116 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC6.21□□□□□ -1.41
COL18A1P39060 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC6.21□□□□□ -1.41
COL18A1P39060 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC6.21□□□□□ -1.41
COL18A1P39060 AL023881.1-201ENST00000621088 301 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 RNA5SP196-201ENST00000625967 102 ntBASIC6.21□□□□□ -1.41
COL18A1P39060 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL18A1P39060 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
COL18A1P39060 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC6.21□□□□□ -1.42
COL18A1P39060 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC6.21□□□□□ -1.42
COL18A1P39060 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL18A1P39060 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC6.21□□□□□ -1.42
COL18A1P39060 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.21□□□□□ -1.42
COL18A1P39060 AL731566.1-201ENST00000620490 1937 ntBASIC6.21□□□□□ -1.42
COL18A1P39060 AC068733.2-201ENST00000605434 1418 ntBASIC6.21□□□□□ -1.42
COL18A1P39060 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL18A1P39060 RNU1-85P-201ENST00000364127 164 ntBASIC6.21□□□□□ -1.42
COL18A1P39060 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL18A1P39060 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
COL18A1P39060 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.21□□□□□ -1.42
COL18A1P39060 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC6.21□□□□□ -1.42
COL18A1P39060 AC041039.1-201ENST00000485656 536 ntBASIC6.21□□□□□ -1.42
COL18A1P39060 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC6.21□□□□□ -1.42
COL18A1P39060 AC106806.2-201ENST00000509365 500 ntBASIC6.21□□□□□ -1.42
COL18A1P39060 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL18A1P39060 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC6.21□□□□□ -1.42
COL18A1P39060 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC6.21□□□□□ -1.42
COL18A1P39060 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC6.21□□□□□ -1.42
COL18A1P39060 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC6.21□□□□□ -1.42
COL18A1P39060 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC6.21□□□□□ -1.42
COL18A1P39060 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL18A1P39060 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL18A1P39060 AL137058.3-201ENST00000624531 3099 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms