Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SNORD65-201ENST00000391079 73 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 RPS4XP9-201ENST00000405151 780 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC013470.3-201ENST00000420252 1194 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 NPM1P26-201ENST00000426339 738 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 RPL23AP4-201ENST00000427757 463 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 NPM1P39-201ENST00000449818 867 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 GTF2F2P1-201ENST00000511083 675 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AP002373.2-201ENST00000541631 1060 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC011447.4-201ENST00000587562 111 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC011487.3-201ENST00000593607 453 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AL022394.1-201ENST00000606979 292 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AP001005.3-201ENST00000622049 129 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC021106.3-201ENST00000623925 531 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC005618.4-201ENST00000625053 554 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC026951.1-201ENST00000559530 2459 ntBASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC114774.1-201ENST00000507410 1770 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AL359715.3-201ENST00000569267 2123 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AP005435.3-201ENST00000531260 3198 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 SNORA51.8-201ENST00000384234 132 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 U3.28-201ENST00000391249 210 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC013442.1-201ENST00000397347 228 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 EI24P3-201ENST00000399046 1062 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AL034403.1-201ENST00000399414 885 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AL158827.1-201ENST00000416300 391 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC007064.3-201ENST00000422608 359 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AL354766.1-201ENST00000423396 542 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 BX276092.6-201ENST00000430476 250 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 BX276092.8-201ENST00000455722 250 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC104629.2-201ENST00000468627 598 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC092324.1-201ENST00000468671 324 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC037198.2-201ENST00000478845 733 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 STRADBP1-201ENST00000478954 1281 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 HAUS1P1-201ENST00000505275 832 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC091912.1-201ENST00000511351 248 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC111000.6-201ENST00000514471 709 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC117525.1-201ENST00000515228 503 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC134349.2-201ENST00000535136 910 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC137768.1-201ENST00000549998 553 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC079075.1-201ENST00000559543 878 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 SULT1C2P2-201ENST00000562517 294 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC009237.13-201ENST00000603193 276 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC009597.2-201ENST00000604659 592 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 uc_338.7-201ENST00000621834 124 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AC091905.4-201ENST00000623432 202 ntBASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 AP003499.2-201ENST00000624100 483 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms