Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC004076.2-201ENST00000620532 3323 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC005005.4-201ENST00000623789 16698 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 RN7SKP28-201ENST00000364770 305 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 TAF9BP2-201ENST00000400856 499 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 GAPDHP42-201ENST00000406848 981 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 UQCRFS1P3-201ENST00000407697 385 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 RN7SKP27-201ENST00000410684 333 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AL390774.1-201ENST00000411924 246 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 HMGN2P27-201ENST00000427352 270 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 RBMY2QP-201ENST00000429799 1147 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC073648.4-201ENST00000442655 781 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC019185.1-201ENST00000442718 389 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AL353898.1-201ENST00000444055 238 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AL035090.1-201ENST00000454835 332 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 RPL5P13-201ENST00000462840 709 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC092902.1-201ENST00000486999 259 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC009120.1-201ENST00000493458 473 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 TOMM22P4-201ENST00000511318 336 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 MIR2117-201ENST00000516780 80 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 OR4A17P-201ENST00000526032 904 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 OR4A43P-201ENST00000532938 908 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC126177.5-201ENST00000549599 178 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 PCNPP1-201ENST00000552501 511 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 ATP5J2P6-201ENST00000565203 266 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC005224.3-201ENST00000584683 2140 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 SNX6P1-201ENST00000601728 1224 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC008745.1-201ENST00000604064 271 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AL355974.3-201ENST00000617383 467 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AP000943.4-201ENST00000622912 357 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC010872.1-201ENST00000624225 675 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC016717.3-201ENST00000624730 554 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 MTCO1P4-201ENST00000520516 1409 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 CASC19-281ENST00000642118 1554 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC114774.1-201ENST00000507410 1770 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AL442128.2-201ENST00000620246 1824 ntBASIC5.37□□□□□ -1.55
COL28A1Q2UY09 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL28A1Q2UY09 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 ZNF90P1-201ENST00000480493 1951 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AP001284.1-201ENST00000528393 2118 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 SNORA63.3-201ENST00000362682 132 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 MIR192-201ENST00000384915 110 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC016712.1-201ENST00000431088 378 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC023141.8-201ENST00000442554 208 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 RPL23AP23-201ENST00000452590 471 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 CALM1P2-201ENST00000452941 448 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 RPS3AP53-201ENST00000454716 778 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 BX284632.1-201ENST00000478218 541 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms