Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXD4P09016 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 OR1F2P-201ENST00000570470 933 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 RBM22P1-201ENST00000578589 1214 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 AP005403.1-201ENST00000579720 229 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXD4P09016 AL023583.1-201ENST00000607518 1143 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 MTCO1P1-201ENST00000624263 1081 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HOXD4P09016 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 Z95327.2-201ENST00000414579 1873 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXD4P09016 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 THAP12P8-201ENST00000447914 2115 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
HOXD4P09016 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
HOXD4P09016 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
HOXD4P09016 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
HOXD4P09016 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
HOXD4P09016 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXD4P09016 DUTP5-201ENST00000406790 469 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 MIR1271-201ENST00000408537 86 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 USP9YP19-201ENST00000412165 485 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXD4P09016 AL358176.3-201ENST00000420757 454 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXD4P09016 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXD4P09016 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXD4P09016 XKRYP6-201ENST00000440468 1116 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 XKRYP3-201ENST00000442113 1116 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXD4P09016 LINC02210-201ENST00000444561 288 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 OR52E3P-201ENST00000452083 936 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 TAAR4P-201ENST00000454843 1039 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 Z92846.1-201ENST00000456203 268 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 AC079168.1-201ENST00000458741 345 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXD4P09016 AC092754.1-201ENST00000472975 479 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 AC016687.1-201ENST00000482574 353 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXD4P09016 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 AC008126.1-201ENST00000549019 480 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 NMNAT1P5-201ENST00000559657 841 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.8□□□□□ -1.64
HOXD4P09016 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 RPL10P14-201ENST00000565265 298 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXD4P09016 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXD4P09016 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 GMCL1P2-201ENST00000605230 823 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXD4P09016 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.8□□□□□ -1.64
HOXD4P09016 AC100827.5-201ENST00000615883 426 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXD4P09016 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXD4P09016 AC099494.2-201ENST00000623371 978 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 AC104820.1-201ENST00000624183 307 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 AC073869.8-201ENST00000641806 335 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 LINC01739-205ENST00000641890 573 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXD4P09016 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXD4P09016 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HOXD4P09016 AL022393.1-201ENST00000625142 1677 ntBASIC4.8□□□□□ -1.64
HOXD4P09016 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXD4P09016 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 MTCO1P22-201ENST00000604619 1360 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXD4P09016 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HOXD4P09016 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC4.79□□□□□ -1.64
HOXD4P09016 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 AL136116.2-201ENST00000404020 785 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 DHFRP5-201ENST00000406944 564 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 RPS26P13-201ENST00000419030 330 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 AL034379.1-201ENST00000423216 253 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 MTND2P11-201ENST00000423638 648 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms