Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU11-201ENST00000387069 134 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 RPS3AP2-201ENST00000407190 754 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 RN7SKP286-201ENST00000410894 299 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 RN7SKP17-201ENST00000411242 351 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AL357752.1-201ENST00000412817 349 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC005005.2-201ENST00000420779 380 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 SUMO2P3-201ENST00000438311 288 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC092685.1-201ENST00000447960 1243 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 OR7E116P-201ENST00000448529 957 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 YWHAEP1-201ENST00000453697 763 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 RPS4XP6-201ENST00000477670 797 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 MTCYBP35-201ENST00000503630 1137 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC139365.2-201ENST00000517972 253 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 IGHV3-63-201ENST00000518422 341 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 HMGN2P36-201ENST00000529541 409 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 LRRC6P1-201ENST00000532188 885 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 OR4U1P-201ENST00000554958 912 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 MIR4789-201ENST00000577469 82 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC005412.1-201ENST00000580812 1049 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 RN7SL622P-201ENST00000585292 275 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC012254.4-201ENST00000588843 273 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC015802.2-201ENST00000589690 189 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC245036.5-201ENST00000596330 847 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AL360012.1-201ENST00000602813 131 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC008536.1-201ENST00000602872 669 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 HIRAP1-201ENST00000605318 787 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC012557.1-201ENST00000607115 611 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC011374.2-201ENST00000607135 526 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC009039.2-201ENST00000624524 529 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC024023.1-201ENST00000624530 922 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC017104.5-201ENST00000637647 639 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AP001153.1-201ENST00000641024 338 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AC025470.1-201ENST00000510053 2032 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 CASC19-281ENST00000642118 1554 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 MTCO1P11-201ENST00000429111 1528 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 MTCO1P18-201ENST00000455518 1419 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC017007.4-201ENST00000503353 1352 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 CIR1P2-201ENST00000514821 1342 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC119751.3-201ENST00000399720 670 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 HSPE1P22-201ENST00000456856 327 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 RN7SL717P-201ENST00000478343 297 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 MTCO3P35-201ENST00000485582 781 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 RPS27AP16-201ENST00000492222 470 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC090058.1-201ENST00000498788 435 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 MTND4LP2-201ENST00000502312 285 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC093752.1-206ENST00000511823 336 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms