Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC021106.1-201ENST00000509020 1058 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.81□□□□□ -1.64
LMX1BO60663 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC4.81□□□□□ -1.64
LMX1BO60663 AC104115.2-201ENST00000523026 687 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.81□□□□□ -1.64
LMX1BO60663 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.81□□□□□ -1.64
LMX1BO60663 AC090888.2-201ENST00000559765 1144 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 AC027281.1-201ENST00000574178 758 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.81□□□□□ -1.64
LMX1BO60663 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LMX1BO60663 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LMX1BO60663 AP000769.2-201ENST00000602344 396 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 IMMP1LP3-201ENST00000604197 224 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 AC004775.1-201ENST00000607389 753 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 AL121652.1-201ENST00000608851 448 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 AC007204.2-201ENST00000615022 616 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.81□□□□□ -1.64
LMX1BO60663 MIR6837-201ENST00000620884 64 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 AL078595.3-201ENST00000623815 1166 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.81□□□□□ -1.64
LMX1BO60663 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC4.81□□□□□ -1.64
LMX1BO60663 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LMX1BO60663 YES1P1-201ENST00000418510 1628 ntBASIC4.81□□□□□ -1.64
LMX1BO60663 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.81□□□□□ -1.64
LMX1BO60663 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
LMX1BO60663 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
LMX1BO60663 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
LMX1BO60663 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LMX1BO60663 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
LMX1BO60663 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LMX1BO60663 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LMX1BO60663 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC4.8□□□□□ -1.64
LMX1BO60663 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 AC087565.3-202ENST00000642085 1603 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC235565.1-201ENST00000456962 1325 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
LMX1BO60663 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 RN7SKP186-201ENST00000365371 303 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 RNU6-650P-201ENST00000365658 111 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 PPIAP9-201ENST00000403866 498 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 AL024507.1-201ENST00000412741 274 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 HYALP1-201ENST00000417674 1279 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC4.8□□□□□ -1.64
LMX1BO60663 RPL12P43-201ENST00000420608 499 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 RIMKLBP2-201ENST00000424737 654 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 AC007000.2-201ENST00000442564 487 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 MTATP6P26-201ENST00000445926 662 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 IGBP1P3-201ENST00000447449 1000 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 REG1CP-206ENST00000447469 496 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 OARD1-211ENST00000480585 829 ntTSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 AC091912.1-201ENST00000511351 248 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 RNA5SP92-201ENST00000516437 110 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 MRPS16P1-201ENST00000523462 412 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 SOX5P1-201ENST00000524155 1127 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 OR8G3P-201ENST00000533406 921 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC005000.1-201ENST00000536192 288 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.8□□□□□ -1.64
LMX1BO60663 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.8□□□□□ -1.64
LMX1BO60663 AC015720.2-201ENST00000567709 334 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AP005403.1-201ENST00000579720 229 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 FKBP1AP1-201ENST00000594588 318 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 VN1R81P-201ENST00000602085 372 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC108738.1-201ENST00000603703 237 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AL445435.1-201ENST00000604232 665 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC097065.2-201ENST00000608159 533 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 AC025574.2-201ENST00000615621 514 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AC079298.2-201ENST00000623885 459 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC4.8□□□□□ -1.64
LMX1BO60663 CU459211.1-201ENST00000635667 749 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LMX1BO60663 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.8□□□□□ -1.64
LMX1BO60663 CASC19-264ENST00000641912 1184 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 AL442128.2-201ENST00000620246 1824 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LMX1BO60663 MAPK10-328ENST00000641553 4009 ntBASIC4.8□□□□□ -1.64
LMX1BO60663 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
LMX1BO60663 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
LMX1BO60663 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.8□□□□□ -1.64
LMX1BO60663 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LMX1BO60663 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms