Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Sh3rf1Q69ZI1 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
Sh3rf1Q69ZI1 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC17.02■□□□□ 0.31
Sh3rf1Q69ZI1 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Sh3rf1Q69ZI1 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Gm21814-202ENSMUST00000203277 873 ntBASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC17.01■□□□□ 0.31
Sh3rf1Q69ZI1 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Gm13401-201ENSMUST00000117074 291 ntBASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Otx2os1-204ENSMUST00000227221 751 ntBASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Gm7712-202ENSMUST00000222331 1510 ntBASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17■□□□□ 0.31
Sh3rf1Q69ZI1 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Sh3rf1Q69ZI1 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Gm8668-201ENSMUST00000120559 1447 ntBASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Timm23-208ENSMUST00000226683 750 ntBASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms