Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Gm10231-201ENSMUST00000181584 441 ntBASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Gm10175-202ENSMUST00000208752 441 ntBASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Mir1668-201ENSMUST00000184114 107 ntBASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Actl10-202ENSMUST00000226583 1501 ntBASIC17.93■□□□□ 0.46
Upf3bQ3ULL6 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 AC134329.2-201ENSMUST00000217897 428 ntBASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3bQ3ULL6 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3bQ3ULL6 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms