Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Gm44544-201ENSMUST00000207052 1844 ntBASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhgb8A0A140LI48 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 AC175538.1-201ENSMUST00000225343 1269 ntBASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Pcdhgb8A0A140LI48 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Pcdhgb8A0A140LI48 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms