Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 RNU6-319P-201ENST00000516025 108 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 RNU6-760P-201ENST00000516078 97 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 RN7SKP147-201ENST00000517154 244 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 RNA5SP373-201ENST00000517271 95 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 OR10D4P-201ENST00000525892 951 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 OR8G3P-201ENST00000533406 921 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 YWHABP2-201ENST00000540201 713 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC099494.2-201ENST00000623371 978 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC091948.2-201ENST00000636510 279 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC016745.2-201ENST00000608834 3443 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC011503.2-201ENST00000594230 1500 ntBASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
CCDC3Q9BQI4 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 CHMP1B2P-201ENST00000399581 597 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 SEPT7P8-201ENST00000413308 775 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC138761.5-201ENST00000433967 325 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC006466.1-201ENST00000438721 289 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 ARL5AP3-201ENST00000439327 386 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AL359265.1-201ENST00000440296 795 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AL606490.8-201ENST00000441624 319 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 RPL31P20-201ENST00000449593 360 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 MORF4L1P4-201ENST00000450245 976 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC104634.1-201ENST00000452720 462 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 HIGD1AP8-201ENST00000453927 274 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC105918.1-201ENST00000474399 838 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AL390726.5-202ENST00000564800 256 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AL359715.3-201ENST00000569267 2123 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC011447.4-201ENST00000587562 111 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC010487.1-201ENST00000594408 1172 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AP000769.2-201ENST00000602344 396 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC009027.1-201ENST00000604510 479 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AL353662.3-201ENST00000625131 237 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC024341.1-201ENST00000526444 1552 ntBASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
CCDC3Q9BQI4 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.15□□□□□ -1.58
CCDC3Q9BQI4 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC3Q9BQI4 AC092111.2-201ENST00000611627 1414 ntBASIC5.15□□□□□ -1.58
CCDC3Q9BQI4 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC3Q9BQI4 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.15□□□□□ -1.58
CCDC3Q9BQI4 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.15□□□□□ -1.58
CCDC3Q9BQI4 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 RN7SKP185-201ENST00000362813 326 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AMZ2P2-201ENST00000406819 1057 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms