Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC42Q96M95 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 NDUFA5P11-201ENST00000567995 343 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC42Q96M95 RNF138P2-201ENST00000603490 592 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 AL049794.2-201ENST00000616301 365 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC42Q96M95 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC42Q96M95 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC42Q96M95 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
CCDC42Q96M95 AC011493.1-201ENST00000596753 1632 ntBASIC5.34□□□□□ -1.56
CCDC42Q96M95 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC42Q96M95 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC42Q96M95 AC009643.2-201ENST00000603543 1448 ntBASIC5.33□□□□□ -1.56
CCDC42Q96M95 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 AP000580.1-201ENST00000404439 358 ntBASIC5.33□□□□□ -1.56
CCDC42Q96M95 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.33□□□□□ -1.56
CCDC42Q96M95 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC42Q96M95 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 AC087783.2-201ENST00000605070 562 ntBASIC5.33□□□□□ -1.56
CCDC42Q96M95 MIR1910-201ENST00000636955 80 ntBASIC5.33□□□□□ -1.56
CCDC42Q96M95 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC42Q96M95 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC42Q96M95 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC42Q96M95 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC42Q96M95 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC42Q96M95 AC133552.1-201ENST00000569988 4007 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 MAPK10-320ENST00000641462 6696 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC42Q96M95 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC42Q96M95 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 AL359922.3-201ENST00000624779 1670 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 AC008549.2-201ENST00000333482 706 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 AL592291.1-201ENST00000403830 352 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 RNA5SP178-201ENST00000410380 128 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 CDY17P-201ENST00000414121 1282 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 SCAND3P1-201ENST00000439854 1060 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 TCEA1P1-201ENST00000449716 880 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 OR52E7P-201ENST00000452394 933 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 RN7SL346P-201ENST00000491561 294 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 Y_RNA.719-201ENST00000517156 106 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 AL049779.2-201ENST00000553847 315 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 AC095055.1-201ENST00000603472 1113 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 MIR6837-201ENST00000620884 64 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC42Q96M95 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 AL034370.1-201ENST00000397254 1590 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 ECM1P2-201ENST00000503354 1577 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC42Q96M95 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC42Q96M95 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC42Q96M95 AC139713.2-215ENST00000641428 5037 ntBASIC5.32□□□□□ -1.56
CCDC42Q96M95 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC42Q96M95 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC42Q96M95 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC42Q96M95 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC42Q96M95 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.31□□□□□ -1.56
CCDC42Q96M95 RNA5SP183-201ENST00000362452 119 ntBASIC5.31□□□□□ -1.56
CCDC42Q96M95 SNORA17.1-201ENST00000362945 126 ntBASIC5.31□□□□□ -1.56
CCDC42Q96M95 RGS17P1-201ENST00000423358 553 ntBASIC5.31□□□□□ -1.56
CCDC42Q96M95 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.31□□□□□ -1.56
CCDC42Q96M95 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.31□□□□□ -1.56
CCDC42Q96M95 FABP7P2-201ENST00000429946 379 ntBASIC5.31□□□□□ -1.56
CCDC42Q96M95 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC42Q96M95 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms