Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 U3.36-201ENST00000408418 213 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 DDX39BP1-205ENST00000422507 192 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC005033.1-201ENST00000428904 813 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 GTF3AP5-201ENST00000442645 697 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AL606490.1-201ENST00000452266 765 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC090114.3-201ENST00000479267 829 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC079841.1-201ENST00000481228 950 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 RNA5SP392-201ENST00000516905 112 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC011447.4-201ENST00000587562 111 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 SNORA35B-201ENST00000607417 129 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC138965.3-201ENST00000623875 498 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 MIR4302-201ENST00000638058 60 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AL121839.2-201ENST00000565058 6943 ntBASIC5.38□□□□□ -1.55
SIX2Q9NPC8 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.38□□□□□ -1.55
SIX2Q9NPC8 AC000374.1-201ENST00000434698 1745 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 SNORA73.1-201ENST00000363107 205 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 SNORA11.3-201ENST00000408471 128 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC016724.1-201ENST00000453215 421 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 HMGN2P25-201ENST00000486956 268 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AL049830.4-201ENST00000555149 351 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 MIR1269B-201ENST00000580405 75 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 KATNBL1P1-201ENST00000605192 748 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 SNORA11.6-201ENST00000619030 128 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC091948.2-201ENST00000636510 279 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC132825.8-201ENST00000640783 297 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC009643.2-201ENST00000603543 1448 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 NXF4-202ENST00000416098 1465 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 AC025574.1-201ENST00000554784 1653 ntBASIC5.37□□□□□ -1.55
SIX2Q9NPC8 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SIX2Q9NPC8 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 RN7SKP273-201ENST00000411392 314 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AC093166.2-201ENST00000455969 1017 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 MTCYBP14-201ENST00000457471 715 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 OR2A3P-201ENST00000493774 953 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AC008953.1-201ENST00000497334 318 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 HIGD1AP14-201ENST00000507617 282 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 COL6A4P2-205ENST00000509855 506 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AC027308.1-201ENST00000517993 110 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC5.36□□□□□ -1.55
SIX2Q9NPC8 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms