Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 OR7E13P-201ENST00000526052 910 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC6.38□□□□□ -1.39
SMARCA1P28370 AGGF1P9-201ENST00000561884 913 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.38□□□□□ -1.39
SMARCA1P28370 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC6.38□□□□□ -1.39
SMARCA1P28370 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.38□□□□□ -1.39
SMARCA1P28370 AP001033.2-201ENST00000609701 1003 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 AC007204.2-201ENST00000615022 616 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 MIR6729-201ENST00000618194 65 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 MIR8080-201ENST00000622224 89 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC6.38□□□□□ -1.39
SMARCA1P28370 AC013437.2-201ENST00000639587 677 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 AC073869.7-201ENST00000640874 297 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 EEF1A1P14-201ENST00000421195 1376 ntBASIC6.38□□□□□ -1.39
SMARCA1P28370 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.38□□□□□ -1.39
SMARCA1P28370 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.38□□□□□ -1.39
SMARCA1P28370 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
SMARCA1P28370 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SMARCA1P28370 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SMARCA1P28370 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.37□□□□□ -1.39
SMARCA1P28370 AC010266.2-201ENST00000564741 3255 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.37□□□□□ -1.39
SMARCA1P28370 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
SMARCA1P28370 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC6.37□□□□□ -1.39
SMARCA1P28370 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
SMARCA1P28370 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC6.37□□□□□ -1.39
SMARCA1P28370 BPHL-201ENST00000380368 797 ntTSL 5 BASIC6.37□□□□□ -1.39
SMARCA1P28370 AL445213.1-201ENST00000412589 747 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC6.37□□□□□ -1.39
SMARCA1P28370 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC6.37□□□□□ -1.39
SMARCA1P28370 FTLP19-201ENST00000433300 394 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 KRTAP8-2P-201ENST00000440620 186 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC105399.1-202ENST00000447303 205 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC098826.2-201ENST00000452011 651 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC6.37□□□□□ -1.39
SMARCA1P28370 AC008410.1-201ENST00000483777 339 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 RPS3AP6-201ENST00000484430 795 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC108693.1-201ENST00000496068 432 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 PPM1AP1-201ENST00000502740 1135 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.37□□□□□ -1.39
SMARCA1P28370 HMGB1P44-201ENST00000508597 572 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.37□□□□□ -1.39
SMARCA1P28370 IGKV2-18-201ENST00000522607 343 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC6.37□□□□□ -1.39
SMARCA1P28370 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.37□□□□□ -1.39
SMARCA1P28370 AL357094.1-201ENST00000603845 844 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC112220.2-201ENST00000605513 533 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC112503.1-201ENST00000608436 391 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC005021.1-201ENST00000608730 355 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AL139124.1-201ENST00000609123 421 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC006946.3-201ENST00000609791 756 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AC105105.5-201ENST00000622635 1294 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC6.37□□□□□ -1.39
SMARCA1P28370 AC000095.2-202ENST00000637415 154 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 OR6C71P-202ENST00000641886 1107 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SMARCA1P28370 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.37□□□□□ -1.39
SMARCA1P28370 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SMARCA1P28370 AC068870.1-201ENST00000563737 2455 ntBASIC6.37□□□□□ -1.39
SMARCA1P28370 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.37□□□□□ -1.39
SMARCA1P28370 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.36□□□□□ -1.39
SMARCA1P28370 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SMARCA1P28370 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
SMARCA1P28370 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.36□□□□□ -1.39
SMARCA1P28370 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SMARCA1P28370 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SMARCA1P28370 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC6.36□□□□□ -1.39
SMARCA1P28370 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC6.36□□□□□ -1.39
SMARCA1P28370 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SMARCA1P28370 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.36□□□□□ -1.39
SMARCA1P28370 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
SMARCA1P28370 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
SMARCA1P28370 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.36□□□□□ -1.39
SMARCA1P28370 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC6.36□□□□□ -1.39
SMARCA1P28370 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC6.36□□□□□ -1.39
SMARCA1P28370 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC6.36□□□□□ -1.39
SMARCA1P28370 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC6.36□□□□□ -1.39
SMARCA1P28370 AL672138.1-201ENST00000450604 1015 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 AC104164.3-201ENST00000467363 1258 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 RN7SL51P-201ENST00000468230 285 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 RN7SL184P-201ENST00000488308 297 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 WDR78-207ENST00000488333 613 ntTSL 3 BASIC6.36□□□□□ -1.39
SMARCA1P28370 AC112518.2-201ENST00000508565 425 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 AC011411.1-201ENST00000509592 876 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 AC091912.1-201ENST00000511351 248 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 ATP5LP3-201ENST00000514223 304 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 RNA5SP362-201ENST00000516048 118 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 OR8Q1P-201ENST00000526467 655 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC6.36□□□□□ -1.39
SMARCA1P28370 AC025918.2-201ENST00000558683 763 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC6.36□□□□□ -1.39
SMARCA1P28370 SNORD39.2-201ENST00000579995 76 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC6.36□□□□□ -1.39
SMARCA1P28370 AC018809.2-201ENST00000602436 3823 ntBASIC6.36□□□□□ -1.39
SMARCA1P28370 AL359513.1-201ENST00000614364 557 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms