Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AP000619.2-201ENST00000546014 969 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.79□□□□□ -1.48
VPS4BO75351 ZNF322P1-201ENST00000568013 1209 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 MIR4701-201ENST00000583094 63 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 RN7SL622P-201ENST00000585292 275 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 LSM1P2-201ENST00000604911 322 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AC025175.1-201ENST00000606482 759 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AL133481.2-203ENST00000607558 139 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS4BO75351 SDR42E1P1-201ENST00000611327 477 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AL080312.2-201ENST00000613001 630 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AC096861.1-201ENST00000616652 240 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS4BO75351 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 AC092111.2-201ENST00000611627 1414 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
VPS4BO75351 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS4BO75351 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS4BO75351 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS4BO75351 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
VPS4BO75351 RNA5SP453-201ENST00000362503 119 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 RNA5SP211-201ENST00000365516 117 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 MIR130B-202ENST00000385018 82 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AL096829.1-201ENST00000413677 457 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS4BO75351 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.78□□□□□ -1.48
VPS4BO75351 RPS24P7-201ENST00000416921 246 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 CRIP1P1-201ENST00000427567 185 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 MTND5P25-201ENST00000430499 799 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AC005189.1-201ENST00000431286 310 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS4BO75351 AC023512.1-201ENST00000444513 499 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS4BO75351 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 ZNF886P-201ENST00000450781 723 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AC016027.4-201ENST00000450866 277 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 FRG2FP-204ENST00000453982 852 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 OFD1P7Y-201ENST00000454643 1155 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AL122001.1-201ENST00000457027 370 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 NAP1L1P3-201ENST00000462291 880 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 PFN1P6-201ENST00000476786 399 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AP000563.1-201ENST00000490865 758 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS4BO75351 RPL5P23-201ENST00000496040 868 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS4BO75351 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS4BO75351 AC108120.2-201ENST00000512973 294 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 AC097486.1-201ENST00000515331 210 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 MTCYBP19-201ENST00000517463 1124 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 MRPS36P3-201ENST00000519284 130 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AC079064.1-201ENST00000528365 362 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS4BO75351 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 AC036111.2-201ENST00000533247 901 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AC090424.1-201ENST00000535243 736 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS4BO75351 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.78□□□□□ -1.48
VPS4BO75351 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS4BO75351 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS4BO75351 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS4BO75351 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS4BO75351 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS4BO75351 CSNK1A1P1-202ENST00000563423 981 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AC099786.3-201ENST00000565735 1410 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS4BO75351 AC145350.1-201ENST00000567426 208 ntBASIC5.78□□□□□ -1.48
VPS4BO75351 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS4BO75351 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms