Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 SLC25A15P5-201ENST00000508033 253 ntBASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 AP001521.2-201ENST00000608772 546 ntBASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 AP005131.7-201ENST00000610087 611 ntBASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 U3.30-201ENST00000391308 210 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 RPL21P108-201ENST00000413857 481 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 RPL7P40-201ENST00000481703 745 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 NIP7P2-201ENST00000485801 544 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AC090058.1-201ENST00000498788 435 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AC021193.1-201ENST00000511607 420 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 GLRXP2-201ENST00000555594 321 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 MIR6830-201ENST00000636015 70 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 RPL5P2-201ENST00000429598 854 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 RN7SL197P-201ENST00000466981 299 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 RN7SL441P-201ENST00000492388 296 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 ENPP7P9-201ENST00000514456 627 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AC111000.6-201ENST00000514471 709 ntBASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC88AQ3V6T2 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 IQCB2P-201ENST00000401788 1633 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AC104118.1-201ENST00000607625 1589 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 SLC25A18P1-201ENST00000449385 454 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 BX842559.2-201ENST00000451418 605 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 RN7SL443P-201ENST00000464331 290 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 RPS12P31-201ENST00000491419 398 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 OR5M2P-201ENST00000529003 936 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AC011626.1-201ENST00000604710 562 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AC114781.5-201ENST00000615297 108 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 uc_338.7-201ENST00000621834 124 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 CCT8P1-201ENST00000413611 1657 ntBASIC6.18□□□□□ -1.42
CCDC88AQ3V6T2 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 SNORA77-201ENST00000408716 125 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 AL591848.1-201ENST00000413092 322 ntBASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC88AQ3V6T2 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms