Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC114774.1-201ENST00000507410 1770 ntBASIC5.19□□□□□ -1.58
NUP54Q7Z3B4 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NUP54Q7Z3B4 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
NUP54Q7Z3B4 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.19□□□□□ -1.58
NUP54Q7Z3B4 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
NUP54Q7Z3B4 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 RNU6-304P-201ENST00000364855 107 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 CCNB2P1-201ENST00000399411 1150 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AL009179.1-201ENST00000406085 265 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 MTND4P15-201ENST00000437913 1033 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AL450263.2-201ENST00000439400 589 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 EEF1B2P6-201ENST00000445713 673 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AL627224.1-201ENST00000448334 444 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC104109.1-201ENST00000498563 436 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC074087.1-201ENST00000512059 724 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC111000.6-201ENST00000514471 709 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC097486.1-201ENST00000515331 210 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC022404.1-201ENST00000555320 273 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 H3F3BP2-201ENST00000583907 357 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 FO393422.1-201ENST00000603908 708 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AC116447.1-201ENST00000613153 453 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AL691477.1-201ENST00000624398 162 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 MUC2-202ENST00000613187 4845 ntBASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.18□□□□□ -1.58
NUP54Q7Z3B4 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 OR4F13P-202ENST00000560066 2054 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 PWAR1-201ENST00000624188 2414 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 RN7SKP185-201ENST00000362813 326 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 RN7SKP81-201ENST00000365603 331 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 AL596448.1-201ENST00000415024 392 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 MTND2P11-201ENST00000423638 648 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 NAP1L4P2-201ENST00000425958 899 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 AC138761.5-201ENST00000433967 325 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 AC099670.2-201ENST00000435130 321 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 AC006335.2-201ENST00000437993 330 ntBASIC5.17□□□□□ -1.58
NUP54Q7Z3B4 NANOGP9-201ENST00000439890 892 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms