Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.29□□□□□ -1.4
RNF4P78317 AC022080.2-201ENST00000452932 533 ntBASIC6.29□□□□□ -1.4
RNF4P78317 RPL31P11-202ENST00000454082 372 ntBASIC6.29□□□□□ -1.4
RNF4P78317 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 MTCO3P11-201ENST00000455103 774 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 FAM133DP-201ENST00000464802 691 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.29□□□□□ -1.4
RNF4P78317 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 PPP1R11P1-201ENST00000486095 376 ntBASIC6.29□□□□□ -1.4
RNF4P78317 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC6.29□□□□□ -1.4
RNF4P78317 AC111193.1-201ENST00000504097 155 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC095057.1-201ENST00000507583 168 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC6.29□□□□□ -1.4
RNF4P78317 AC011352.2-201ENST00000514574 1016 ntBASIC6.29□□□□□ -1.4
RNF4P78317 NREP-223ENST00000515855 801 ntTSL 4 BASIC6.29□□□□□ -1.4
RNF4P78317 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 AC084337.1-201ENST00000524809 686 ntBASIC6.29□□□□□ -1.4
RNF4P78317 SNRPCP6-201ENST00000528310 210 ntBASIC6.29□□□□□ -1.4
RNF4P78317 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC6.29□□□□□ -1.4
RNF4P78317 TPRKBP2-201ENST00000565969 475 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 AC027796.1-201ENST00000575593 512 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 MIR548AB-201ENST00000584917 84 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 AC091135.1-201ENST00000585943 307 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC6.29□□□□□ -1.4
RNF4P78317 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.29□□□□□ -1.4
RNF4P78317 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC6.29□□□□□ -1.4
RNF4P78317 AC006566.1-201ENST00000608943 513 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC017083.3-201ENST00000609955 700 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AL353726.1-201ENST00000614041 1000 ntBASIC6.29□□□□□ -1.4
RNF4P78317 MIR6849-201ENST00000618543 69 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC005899.6-201ENST00000620729 297 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC025287.2-201ENST00000621911 668 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC006328.2-201ENST00000623198 397 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC012005.2-201ENST00000624333 397 ntBASIC6.29□□□□□ -1.4
RNF4P78317 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
RNF4P78317 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 AC093297.3-201ENST00000607056 2517 ntBASIC6.29□□□□□ -1.4
RNF4P78317 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.28□□□□□ -1.4
RNF4P78317 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
RNF4P78317 AC010329.1-201ENST00000593903 8328 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AC005839.1-201ENST00000624148 3213 ntBASIC6.28□□□□□ -1.4
RNF4P78317 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
RNF4P78317 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.28□□□□□ -1.4
RNF4P78317 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.28□□□□□ -1.4
RNF4P78317 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.28□□□□□ -1.4
RNF4P78317 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC6.28□□□□□ -1.4
RNF4P78317 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC6.28□□□□□ -1.4
RNF4P78317 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 RNA5SP65-201ENST00000363166 119 ntBASIC6.28□□□□□ -1.4
RNF4P78317 RNU4-91P-201ENST00000364778 135 ntBASIC6.28□□□□□ -1.4
RNF4P78317 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 ESD-201ENST00000378697 1079 ntTSL 5 BASIC6.28□□□□□ -1.4
RNF4P78317 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
RNF4P78317 ARSFP1-201ENST00000398758 477 ntBASIC6.28□□□□□ -1.4
RNF4P78317 RN7SKP205-201ENST00000410999 307 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC6.28□□□□□ -1.4
RNF4P78317 AL663061.1-201ENST00000416625 580 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AC114814.2-201ENST00000419195 485 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AC006509.1-201ENST00000420788 634 ntBASIC6.28□□□□□ -1.4
RNF4P78317 SPATA20P1-201ENST00000423089 438 ntBASIC6.28□□□□□ -1.4
RNF4P78317 SLC44A3-AS1-205ENST00000424505 612 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 AC002069.1-201ENST00000429649 1159 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AL022324.2-201ENST00000434827 780 ntBASIC6.28□□□□□ -1.4
RNF4P78317 MTND1P28-201ENST00000435623 950 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 UBE2V1P3-201ENST00000439651 417 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC6.28□□□□□ -1.4
RNF4P78317 EEF1E1P1-201ENST00000446998 430 ntBASIC6.28□□□□□ -1.4
RNF4P78317 RPL31P44-201ENST00000447680 377 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AL121578.2-201ENST00000448797 447 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 NPM1P9-201ENST00000453156 844 ntBASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms