Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 U3.30-201ENST00000391308 210 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 RN7SKP114-201ENST00000410327 279 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 RPL12P9-201ENST00000412942 488 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.37□□□□□ -1.55
COL4A4P53420 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.37□□□□□ -1.55
COL4A4P53420 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.37□□□□□ -1.55
COL4A4P53420 AC133555.2-201ENST00000550213 292 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 AC069366.1-201ENST00000583159 838 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 KPNA2P3-201ENST00000584190 848 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 CCDC58P3-201ENST00000590792 430 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.37□□□□□ -1.55
COL4A4P53420 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.37□□□□□ -1.55
COL4A4P53420 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
COL4A4P53420 AC005261.2-201ENST00000593427 4258 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC5.37□□□□□ -1.55
COL4A4P53420 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL4A4P53420 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 IQCB2P-201ENST00000401788 1633 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
COL4A4P53420 OR1L6-202ENST00000373684 1044 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 COX5BP7-201ENST00000414780 274 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC5.37□□□□□ -1.55
COL4A4P53420 ARL2BPP10-201ENST00000446487 531 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 IGHV5-78-201ENST00000450948 295 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 OR52E3P-201ENST00000452083 936 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 RN7SKP276-201ENST00000516242 268 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 RNA5SP392-201ENST00000516905 112 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 IGKV2D-10-201ENST00000520194 281 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 SOX5P1-201ENST00000524155 1127 ntBASIC5.37□□□□□ -1.55
COL4A4P53420 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL4A4P53420 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL4A4P53420 MAPK10-371ENST00000641952 5209 ntBASIC5.36□□□□□ -1.55
COL4A4P53420 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
COL4A4P53420 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.36□□□□□ -1.55
COL4A4P53420 DMD-202ENST00000343523 5623 ntTSL 5 BASIC5.36□□□□□ -1.55
COL4A4P53420 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL4A4P53420 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.36□□□□□ -1.55
COL4A4P53420 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.36□□□□□ -1.55
COL4A4P53420 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.36□□□□□ -1.55
COL4A4P53420 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
COL4A4P53420 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL4A4P53420 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC5.36□□□□□ -1.55
COL4A4P53420 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL4A4P53420 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
COL4A4P53420 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.36□□□□□ -1.55
COL4A4P53420 SNORA70F-201ENST00000384142 135 ntBASIC5.36□□□□□ -1.55
COL4A4P53420 RN7SKP263-201ENST00000411194 309 ntBASIC5.36□□□□□ -1.55
COL4A4P53420 HYALP1-201ENST00000417674 1279 ntBASIC5.36□□□□□ -1.55
COL4A4P53420 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.36□□□□□ -1.55
COL4A4P53420 OR2B7P-201ENST00000429302 934 ntBASIC5.36□□□□□ -1.55
COL4A4P53420 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.36□□□□□ -1.55
COL4A4P53420 RPS29P9-201ENST00000440360 171 ntBASIC5.36□□□□□ -1.55
COL4A4P53420 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.36□□□□□ -1.55
COL4A4P53420 EIF2S2P2-201ENST00000447161 982 ntBASIC5.36□□□□□ -1.55
COL4A4P53420 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.36□□□□□ -1.55
COL4A4P53420 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC5.36□□□□□ -1.55
COL4A4P53420 ENPP7P9-201ENST00000514456 627 ntBASIC5.36□□□□□ -1.55
COL4A4P53420 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.36□□□□□ -1.55
COL4A4P53420 HNRNPRP2-201ENST00000528421 743 ntBASIC5.36□□□□□ -1.55
COL4A4P53420 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.36□□□□□ -1.55
COL4A4P53420 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC5.36□□□□□ -1.55
COL4A4P53420 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.36□□□□□ -1.55
COL4A4P53420 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL4A4P53420 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
COL4A4P53420 SMG1P7-201ENST00000565246 2704 ntBASIC5.36□□□□□ -1.55
COL4A4P53420 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.36□□□□□ -1.55
COL4A4P53420 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL4A4P53420 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.35□□□□□ -1.55
COL4A4P53420 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
COL4A4P53420 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms