Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
CUX1P39880 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC8.26□□□□□ -1.09
CUX1P39880 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
CUX1P39880 PPIAP21-201ENST00000464473 501 ntBASIC8.26□□□□□ -1.09
CUX1P39880 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC8.26□□□□□ -1.09
CUX1P39880 AL049839.1-201ENST00000556151 657 ntBASIC8.26□□□□□ -1.09
CUX1P39880 AC115286.1-201ENST00000604298 434 ntBASIC8.26□□□□□ -1.09
CUX1P39880 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
CUX1P39880 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
CUX1P39880 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC8.26□□□□□ -1.09
CUX1P39880 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC8.26□□□□□ -1.09
CUX1P39880 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC8.26□□□□□ -1.09
CUX1P39880 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC8.26□□□□□ -1.09
CUX1P39880 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
CUX1P39880 AL117339.4-201ENST00000608335 7063 ntBASIC8.26□□□□□ -1.09
CUX1P39880 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CUX1P39880 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CUX1P39880 OFD1P9Y-201ENST00000417699 1491 ntBASIC8.25□□□□□ -1.09
CUX1P39880 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX1P39880 IGKV7-3-201ENST00000357453 298 ntBASIC8.25□□□□□ -1.09
CUX1P39880 MIR1193-201ENST00000408109 78 ntBASIC8.25□□□□□ -1.09
CUX1P39880 RNU4-64P-201ENST00000410795 131 ntBASIC8.25□□□□□ -1.09
CUX1P39880 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC8.25□□□□□ -1.09
CUX1P39880 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC8.25□□□□□ -1.09
CUX1P39880 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC8.25□□□□□ -1.09
CUX1P39880 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC8.25□□□□□ -1.09
CUX1P39880 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC8.25□□□□□ -1.09
CUX1P39880 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC8.25□□□□□ -1.09
CUX1P39880 FAM27B-201ENST00000610601 213 ntBASIC8.25□□□□□ -1.09
CUX1P39880 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC8.25□□□□□ -1.09
CUX1P39880 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX1P39880 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC8.25□□□□□ -1.09
CUX1P39880 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX1P39880 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
CUX1P39880 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CUX1P39880 SMG1P6-201ENST00000532337 2930 ntBASIC8.25□□□□□ -1.09
CUX1P39880 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX1P39880 MTCO1P15-201ENST00000529569 1526 ntBASIC8.25□□□□□ -1.09
CUX1P39880 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CUX1P39880 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX1P39880 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC8.25□□□□□ -1.09
CUX1P39880 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
CUX1P39880 RN7SKP16-201ENST00000410180 299 ntBASIC8.24□□□□□ -1.09
CUX1P39880 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC8.24□□□□□ -1.09
CUX1P39880 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CUX1P39880 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC8.24□□□□□ -1.09
CUX1P39880 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC8.24□□□□□ -1.09
CUX1P39880 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC8.24□□□□□ -1.09
CUX1P39880 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC8.24□□□□□ -1.09
CUX1P39880 BUD31P1-201ENST00000521828 359 ntBASIC8.24□□□□□ -1.09
CUX1P39880 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC8.24□□□□□ -1.09
CUX1P39880 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC8.24□□□□□ -1.09
CUX1P39880 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC8.24□□□□□ -1.09
CUX1P39880 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
CUX1P39880 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CUX1P39880 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CUX1P39880 AC007382.1-201ENST00000624376 2618 ntBASIC8.24□□□□□ -1.09
CUX1P39880 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
CUX1P39880 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC8.24□□□□□ -1.09
CUX1P39880 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC8.24□□□□□ -1.09
CUX1P39880 CR1-204ENST00000367052 7469 ntTSL 5 BASIC8.24□□□□□ -1.09
CUX1P39880 CR1-205ENST00000367053 7469 ntTSL 5 BASIC8.24□□□□□ -1.09
CUX1P39880 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC8.24□□□□□ -1.09
CUX1P39880 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
CUX1P39880 AL035079.1-201ENST00000405210 287 ntBASIC8.24□□□□□ -1.09
CUX1P39880 GLUD1P9-201ENST00000420997 1173 ntBASIC8.24□□□□□ -1.09
CUX1P39880 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC8.24□□□□□ -1.09
CUX1P39880 ARL2BPP10-201ENST00000446487 531 ntBASIC8.24□□□□□ -1.09
CUX1P39880 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC8.24□□□□□ -1.09
CUX1P39880 SNORA70.11-201ENST00000515987 138 ntBASIC8.24□□□□□ -1.09
CUX1P39880 SNORA70.13-201ENST00000516116 138 ntBASIC8.24□□□□□ -1.09
CUX1P39880 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC8.24□□□□□ -1.09
CUX1P39880 MIR5699-201ENST00000578903 90 ntBASIC8.24□□□□□ -1.09
CUX1P39880 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC8.24□□□□□ -1.09
CUX1P39880 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
CUX1P39880 AL442639.1-201ENST00000625030 1899 ntBASIC8.23□□□□□ -1.09
CUX1P39880 MSL3P1-202ENST00000440028 1468 ntBASIC8.23□□□□□ -1.09
CUX1P39880 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC8.23□□□□□ -1.09
CUX1P39880 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC8.23□□□□□ -1.09
CUX1P39880 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CUX1P39880 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC8.23□□□□□ -1.09
CUX1P39880 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC8.23□□□□□ -1.09
CUX1P39880 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
CUX1P39880 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CUX1P39880 MIR23A-201ENST00000385245 73 ntBASIC8.23□□□□□ -1.09
CUX1P39880 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC8.23□□□□□ -1.09
CUX1P39880 AC006065.1-201ENST00000422539 802 ntBASIC8.23□□□□□ -1.09
CUX1P39880 AL359265.1-201ENST00000440296 795 ntBASIC8.23□□□□□ -1.09
CUX1P39880 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC8.23□□□□□ -1.09
CUX1P39880 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC8.23□□□□□ -1.09
CUX1P39880 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC8.23□□□□□ -1.09
CUX1P39880 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC8.23□□□□□ -1.09
CUX1P39880 AC022726.1-201ENST00000587475 207 ntBASIC8.23□□□□□ -1.09
CUX1P39880 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
CUX1P39880 AC125257.1-201ENST00000560400 2930 ntBASIC8.23□□□□□ -1.09
CUX1P39880 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC8.22□□□□□ -1.09
CUX1P39880 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC8.22□□□□□ -1.09
CUX1P39880 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC8.22□□□□□ -1.09
CUX1P39880 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC8.22□□□□□ -1.09
CUX1P39880 AC004076.2-201ENST00000620532 3323 ntBASIC8.22□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms