Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 GLS2-215ENST00000539272 2174 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 LINC00598-208ENST00000617777 2551 ntTSL 2 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC104083.1-201ENST00000569449 2615 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 TNPO3-202ENST00000471166 3019 ntTSL 5 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 GRIA2-201ENST00000264426 3445 ntAPPRIS ALT1 TSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 LEMD1-204ENST00000367153 929 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 Y_RNA.389-201ENST00000383924 113 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC008063.1-201ENST00000418335 640 ntTSL 3 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AL590609.2-201ENST00000421430 368 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 LINC00851-201ENST00000423033 727 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC004160.2-201ENST00000425837 563 ntTSL 4 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 RPS17P8-201ENST00000434525 335 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 RPS28P8-201ENST00000435020 208 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 NEFLP1-201ENST00000436364 984 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AF228730.2-201ENST00000438784 848 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AL136454.1-201ENST00000443181 466 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC073109.1-201ENST00000445066 978 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 LINC01015-204ENST00000445296 399 ntTSL 3 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 MGAT2P1-201ENST00000449718 797 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC108868.2-201ENST00000451464 511 ntTSL 2 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC093799.1-201ENST00000452411 499 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 H3F3AP3-201ENST00000497682 407 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 SELENOP-204ENST00000507920 786 ntTSL 5 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 MTCO3P44-201ENST00000510977 541 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC091839.1-201ENST00000513087 269 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC091820.2-201ENST00000521697 523 ntTSL 4 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 FAU-203ENST00000525297 355 ntTSL 5 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC073896.5-201ENST00000546464 542 ntTSL 5 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC126177.6-201ENST00000550420 1009 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 COPZ1-215ENST00000552362 575 ntTSL 4 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 MEG8-218ENST00000556720 456 ntTSL 3 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 TBC1D29-201ENST00000579181 652 ntAPPRIS P2 TSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 TBC1D29-204ENST00000584297 602 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AL021808.1-201ENST00000604325 1117 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AP005329.3-201ENST00000609924 686 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 MIR6128-201ENST00000615528 109 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 TUG1_3.1-201ENST00000616187 237 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC245033.3-201ENST00000617986 224 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC018926.3-201ENST00000618841 406 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC005858.3-201ENST00000624756 589 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 HSD11B1-203ENST00000367028 1461 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 OR2V2-203ENST00000641791 4428 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC084782.1-201ENST00000564401 2465 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC009948.5-201ENST00000624360 4406 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AMPD1-201ENST00000369538 2392 ntAPPRIS ALT2 TSL 2 BASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 AC006141.1-201ENST00000581917 2170 ntBASIC7.97□□□□□ -1.13
VPS9D1Q9Y2B5 CTH-202ENST00000370938 1805 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
VPS9D1Q9Y2B5 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC7.96□□□□□ -1.13
VPS9D1Q9Y2B5 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC7.96□□□□□ -1.13
VPS9D1Q9Y2B5 LINC02099-202ENST00000522158 2980 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
VPS9D1Q9Y2B5 KLHL32-202ENST00000369261 3698 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.13
VPS9D1Q9Y2B5 ZNF19-210ENST00000567225 2838 ntTSL 3 BASIC7.96□□□□□ -1.13
VPS9D1Q9Y2B5 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 TRAF3IP2-AS1-209ENST00000532226 2191 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 AC006213.1-202ENST00000589021 2176 ntTSL 2 BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 RPL32P3-201ENST00000359025 275 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 SNORA20.1-201ENST00000364790 130 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 RNA5SP240-201ENST00000365355 128 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 RN7SKP208-201ENST00000365474 361 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 GSTM1-203ENST00000369819 790 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 RNU6-662P-201ENST00000384253 104 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 Y_RNA.530-201ENST00000384587 101 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 CNN3P1-201ENST00000401596 935 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 BTBD10P2-201ENST00000404779 676 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 RNU6-193P-201ENST00000410977 107 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 RN7SKP144-201ENST00000411108 279 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 TPMTP2-201ENST00000414372 726 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 RPA2P2-201ENST00000419698 796 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 PGBD4P6-201ENST00000421501 610 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 RPL21P91-201ENST00000429231 479 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 KRTAP9-11P-201ENST00000431013 525 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 GPR143P-201ENST00000434155 205 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 AL592114.2-201ENST00000440142 532 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 DDX3X-202ENST00000441189 1051 ntTSL 2 BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 AC009970.1-201ENST00000444873 432 ntTSL 3 BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 LINC02022-201ENST00000448129 635 ntTSL 2 BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 HMGB1P15-201ENST00000453854 435 ntBASIC7.96□□□□□ -1.14
VPS9D1Q9Y2B5 TXNP3-201ENST00000454560 301 ntBASIC7.96□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms