| CNTN3 | Q9P232 | LAPTM4BP1-201 | ENST00000447781 | 690 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | LINC00704-203 | ENST00000449712 | 703 nt | TSL 3 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | TMSB4X-204 | ENST00000451311 | 628 nt | APPRIS P1 TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | PHKA2-AS1-202 | ENST00000452900 | 656 nt | TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | RFC5P1-201 | ENST00000454419 | 874 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MTND1P16-201 | ENST00000465177 | 898 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC093870.1-201 | ENST00000506837 | 213 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC096754.1-201 | ENST00000508904 | 818 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC117460.1-201 | ENST00000508964 | 467 nt | TSL 3 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC092903.2-201 | ENST00000510244 | 427 nt | TSL 5 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC108727.1-201 | ENST00000513802 | 393 nt | TSL 2 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | TCP11X3P-202 | ENST00000514289 | 1254 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AP003438.1-201 | ENST00000518704 | 435 nt | TSL 3 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC016813.1-201 | ENST00000521511 | 735 nt | TSL 3 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | OPRM1-223 | ENST00000524163 | 1251 nt | APPRIS ALT1 TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC109635.3-201 | ENST00000529536 | 185 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | OR6C7P-201 | ENST00000547875 | 934 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC074029.1-201 | ENST00000552531 | 1044 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL392023.2-202 | ENST00000555342 | 494 nt | TSL 5 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC026956.1-201 | ENST00000558741 | 396 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC007496.1-201 | ENST00000565641 | 739 nt | TSL 3 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | LINC00907-208 | ENST00000593051 | 1092 nt | TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC010325.2-201 | ENST00000594114 | 260 nt | TSL 3 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | VN1R92P-201 | ENST00000598511 | 928 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | BNIP3P33-201 | ENST00000598912 | 569 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | DTNA-232 | ENST00000599844 | 853 nt | TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC114477.1-201 | ENST00000605097 | 605 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SNORD96A-201 | ENST00000606577 | 79 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AP001330.5-201 | ENST00000607176 | 411 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AP005137.2-201 | ENST00000609238 | 400 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL589743.7-201 | ENST00000612637 | 233 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC004241.2-201 | ENST00000614562 | 444 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | STMN1P1-201 | ENST00000617809 | 440 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | BANCR-201 | ENST00000624238 | 473 nt | TSL 2 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC099654.10-201 | ENST00000640395 | 161 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SSR1-201 | ENST00000244763 | 9669 nt | APPRIS P1 TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | KLHL5-205 | ENST00000508137 | 2926 nt | TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | DNM1L-205 | ENST00000414834 | 4211 nt | TSL 2 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | LINC02523-201 | ENST00000423208 | 2963 nt | TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MTND5P23-201 | ENST00000430812 | 1655 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL669831.5-218 | ENST00000591702 | 1873 nt | BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | EXTL2-201 | ENST00000370113 | 2835 nt | APPRIS P1 TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | OR56B1-201 | ENST00000317121 | 2075 nt | APPRIS P1 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | FBXW10-203 | ENST00000395665 | 3431 nt | APPRIS P3 TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SLC10A7-202 | ENST00000394059 | 1730 nt | TSL 1 (best) BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | OR11G2-203 | ENST00000641879 | 4415 nt | APPRIS P1 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | FAM197Y2-202 | ENST00000448006 | 2338 nt | TSL 2 BASIC | 7.21 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | OR8B8-202 | ENST00000642064 | 3914 nt | APPRIS P1 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | URI1-201 | ENST00000360605 | 1579 nt | APPRIS ALT2 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | RNF217-201 | ENST00000359704 | 1784 nt | TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AMY1B-202 | ENST00000370080 | 1787 nt | APPRIS P1 TSL 2 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | GPR1-209 | ENST00000612892 | 2565 nt | APPRIS P1 TSL 4 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MSR1-202 | ENST00000350896 | 3572 nt | TSL 5 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MYO6-201 | ENST00000369975 | 5387 nt | TSL 5 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | FAM208A-210 | ENST00000614531 | 3441 nt | TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | TRMT10A-202 | ENST00000394876 | 1638 nt | APPRIS P1 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ASNSP6-201 | ENST00000592770 | 1618 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ADGRL3-205 | ENST00000506746 | 4935 nt | APPRIS ALT2 TSL 5 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC241584.2-201 | ENST00000637142 | 2090 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MME-203 | ENST00000460393 | 5622 nt | APPRIS P1 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | STIL-203 | ENST00000371877 | 5009 nt | APPRIS ALT2 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | TMC5-205 | ENST00000542583 | 4872 nt | APPRIS ALT2 TSL 2 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | OR52N5-201 | ENST00000317093 | 1034 nt | APPRIS P1 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | OR5K1-201 | ENST00000332650 | 1097 nt | APPRIS P1 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | RNU6-621P-201 | ENST00000364752 | 109 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | Y_RNA.311-201 | ENST00000365068 | 96 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SNORA64.3-201 | ENST00000365647 | 134 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MLIP-203 | ENST00000370877 | 1234 nt | APPRIS ALT2 TSL 5 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL672167.2-201 | ENST00000377164 | 879 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL139095.4-201 | ENST00000379928 | 500 nt | TSL 2 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | Y_RNA.390-201 | ENST00000383932 | 102 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | U3.52-201 | ENST00000384034 | 216 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SPRR2A-201 | ENST00000392653 | 709 nt | APPRIS P1 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | NCSTNP1-201 | ENST00000406229 | 144 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | OR2A2-201 | ENST00000408979 | 1051 nt | APPRIS P1 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | EMX2OS-201 | ENST00000412075 | 1025 nt | TSL 2 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | LINC01934-201 | ENST00000414750 | 391 nt | TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | LINC01198-201 | ENST00000416521 | 500 nt | TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL023581.1-201 | ENST00000423500 | 455 nt | TSL 2 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MTCO1P54-201 | ENST00000430139 | 712 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL513348.1-201 | ENST00000435554 | 440 nt | TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC076966.1-201 | ENST00000435560 | 351 nt | TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | TMX2P1-201 | ENST00000436507 | 708 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL139161.1-201 | ENST00000443207 | 190 nt | TSL 5 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ANK3-207 | ENST00000460468 | 677 nt | TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC044810.1-201 | ENST00000480271 | 711 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC005017.1-201 | ENST00000482002 | 490 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC117395.1-201 | ENST00000487390 | 403 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC131211.1-201 | ENST00000497285 | 483 nt | TSL 5 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | EGFLAM-AS3-201 | ENST00000505267 | 549 nt | TSL 5 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC074344.1-201 | ENST00000512823 | 224 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | TBCA-209 | ENST00000522370 | 435 nt | TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | IL18-204 | ENST00000528832 | 795 nt | APPRIS P3 TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | TPRXL-210 | ENST00000532753 | 478 nt | TSL 4 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | KLRF2-201 | ENST00000535540 | 731 nt | APPRIS P1 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | TRDV3-201 | ENST00000535880 | 425 nt | APPRIS P1 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC022509.2-201 | ENST00000540392 | 699 nt | TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC023813.1-201 | ENST00000565055 | 306 nt | TSL 5 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | LINC00556-201 | ENST00000569603 | 412 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC005180.2-201 | ENST00000585620 | 562 nt | TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |