Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RNF10P1-201ENST00000418589 369 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC019205.1-201ENST00000421830 730 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 GTF2IP2-201ENST00000424290 697 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RN7SL738P-201ENST00000470264 297 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC103987.1-201ENST00000473394 348 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 OR4A17P-201ENST00000526032 904 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC060780.2-201ENST00000589047 198 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 Y_RNA.126-201ENST00000363382 111 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RNU1-146P-201ENST00000364015 165 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MIR551A-201ENST00000385042 96 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 OR10T1P-201ENST00000424327 947 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AL161722.2-201ENST00000434731 981 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 EIF4EBP2P1-201ENST00000450009 343 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RN7SKP92-201ENST00000517266 244 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 ASB8-204ENST00000536071 568 ntTSL 4 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC005962.2-201ENST00000611427 652 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RN7SKP149-201ENST00000363008 344 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RNU6-398P-201ENST00000384143 109 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 GLULP6-201ENST00000399502 913 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RPL10P10-201ENST00000403509 664 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AL590399.4-201ENST00000436561 601 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC011753.3-201ENST00000443436 406 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 RPS7P6-201ENST00000485777 579 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC136777.2-201ENST00000522979 358 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 BLZF2P-201ENST00000553776 1130 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 AC135068.12-201ENST00000637370 931 ntBASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SYNE1Q8NF91 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC004656.1-201ENST00000568479 4951 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 TEX41-205ENST00000431734 529 ntTSL 4 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC234781.3-201ENST00000452540 973 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC093824.1-201ENST00000508796 343 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AP000769.2-201ENST00000602344 396 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 SNORA67-201ENST00000384423 137 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 MIR589-201ENST00000385238 99 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 MTND6P2-201ENST00000512226 524 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 CCDC58P3-201ENST00000590792 430 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC099494.2-201ENST00000623371 978 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC009120.7-201ENST00000623452 780 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms