Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 RNA5SP339-201ENST00000390987 122 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AL035419.1-201ENST00000397037 564 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 RN7SKP17-201ENST00000411242 351 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 GSTM5P1-201ENST00000434751 660 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 RPS11P7-201ENST00000442125 465 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 HSPE1P22-201ENST00000456856 327 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 OR9N1P-201ENST00000491296 333 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 SNRPCP2-201ENST00000504370 475 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 RPS27AP18-201ENST00000515536 459 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 OR5AM1P-201ENST00000532136 1032 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AC106730.2-201ENST00000566641 540 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AC006116.3-201ENST00000592968 361 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AL592494.3-201ENST00000609485 464 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AC105105.5-201ENST00000622635 1294 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AC011493.1-201ENST00000596753 1632 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 SNORA56-201ENST00000383966 129 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AC073648.4-201ENST00000442655 781 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 RPL21P133-201ENST00000443666 476 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AL389915.2-201ENST00000454576 441 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 GYG1P1-201ENST00000460864 698 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 RPL7P6-201ENST00000480903 738 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 CEACAMP10-202ENST00000495431 496 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 HMGB1P44-201ENST00000508597 572 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AC020937.1-201ENST00000519677 1013 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 FAM60CP-201ENST00000591086 664 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 TAS2R6P-201ENST00000605022 826 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AC010435.1-201ENST00000623353 1177 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AL158152.1-201ENST00000602652 1435 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AL355834.1-201ENST00000556602 3965 ntBASIC5.48□□□□□ -1.53
HDDC3Q8N4P3 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC104964.3-201ENST00000606115 2860 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 RNU6-386P-201ENST00000362650 107 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AL392003.1-201ENST00000434394 243 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 RPL31P53-201ENST00000457065 348 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 FTH1P2-201ENST00000466086 412 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 RPS29P22-201ENST00000472363 168 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms