Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 RPS4XP19-201ENST00000460237 736 ntBASIC5.84□□□□□ -1.47
MSX2P35548 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
MSX2P35548 BZW1P2-201ENST00000473537 826 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX2P35548 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX2P35548 AC105391.1-201ENST00000503155 1045 ntBASIC5.84□□□□□ -1.47
MSX2P35548 SUMO2P4-201ENST00000504193 276 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.84□□□□□ -1.47
MSX2P35548 AC010343.2-201ENST00000510162 224 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX2P35548 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 AC020937.1-201ENST00000519677 1013 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 AC244502.2-201ENST00000543361 851 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AC008126.1-201ENST00000549019 480 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX2P35548 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 MIR4312-201ENST00000579909 76 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX2P35548 AC012254.4-201ENST00000588843 273 ntBASIC5.84□□□□□ -1.47
MSX2P35548 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX2P35548 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC5.84□□□□□ -1.47
MSX2P35548 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 AC025857.2-201ENST00000602711 238 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AL163642.2-201ENST00000604722 1019 ntBASIC5.84□□□□□ -1.47
MSX2P35548 RN7SKP299-201ENST00000606679 301 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AL121890.3-201ENST00000618494 516 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AL133370.2-201ENST00000619934 439 ntBASIC5.84□□□□□ -1.47
MSX2P35548 MIR7159-201ENST00000620587 66 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AL137067.2-201ENST00000621202 131 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AC005514.1-201ENST00000623521 208 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AL603839.4-201ENST00000624658 1005 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX2P35548 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
MSX2P35548 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.48
MSX2P35548 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
MSX2P35548 SLC2A3P4-201ENST00000521259 1471 ntBASIC5.83□□□□□ -1.48
MSX2P35548 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
MSX2P35548 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
MSX2P35548 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
MSX2P35548 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
MSX2P35548 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
MSX2P35548 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 RNU6-553P-201ENST00000364047 96 ntBASIC5.83□□□□□ -1.48
MSX2P35548 RNU6-1251P-201ENST00000364502 107 ntBASIC5.83□□□□□ -1.48
MSX2P35548 SNORA43.1-201ENST00000364863 140 ntBASIC5.83□□□□□ -1.48
MSX2P35548 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.83□□□□□ -1.48
MSX2P35548 AL391422.1-201ENST00000402155 436 ntBASIC5.83□□□□□ -1.48
MSX2P35548 EEF1GP6-201ENST00000402309 905 ntBASIC5.83□□□□□ -1.48
MSX2P35548 ERHP2-201ENST00000402323 299 ntBASIC5.83□□□□□ -1.48
MSX2P35548 GSTA12P-201ENST00000402398 508 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AL132875.1-201ENST00000403623 949 ntBASIC5.83□□□□□ -1.48
MSX2P35548 SOD1P1-201ENST00000407803 440 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX2P35548 PRUNEP1-201ENST00000425846 705 ntBASIC5.83□□□□□ -1.48
MSX2P35548 HIGD1AP12-201ENST00000427832 281 ntBASIC5.83□□□□□ -1.48
MSX2P35548 DSTNP5-201ENST00000427921 523 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX2P35548 AC129850.1-201ENST00000436203 508 ntBASIC5.83□□□□□ -1.48
MSX2P35548 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX2P35548 COX7BP2-201ENST00000437976 242 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX2P35548 MTND4P25-201ENST00000441039 533 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX2P35548 GTF2IP14-201ENST00000441415 586 ntBASIC5.83□□□□□ -1.48
MSX2P35548 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC5.83□□□□□ -1.48
MSX2P35548 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 OR2AF1P-201ENST00000454899 889 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX2P35548 SYPL1P1-201ENST00000473622 768 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AC124945.1-201ENST00000485133 188 ntBASIC5.83□□□□□ -1.48
MSX2P35548 RN7SL714P-201ENST00000487050 298 ntBASIC5.83□□□□□ -1.48
MSX2P35548 TRBV5-2-201ENST00000489095 273 ntBASIC5.83□□□□□ -1.48
MSX2P35548 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.83□□□□□ -1.48
MSX2P35548 PFN1P8-201ENST00000497012 543 ntBASIC5.83□□□□□ -1.48
MSX2P35548 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX2P35548 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX2P35548 RN7SKP196-201ENST00000516267 345 ntBASIC5.83□□□□□ -1.48
MSX2P35548 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX2P35548 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC5.83□□□□□ -1.48
MSX2P35548 OR6M2P-201ENST00000529831 871 ntBASIC5.83□□□□□ -1.48
MSX2P35548 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.83□□□□□ -1.48
MSX2P35548 BTG1P1-201ENST00000540396 508 ntBASIC5.83□□□□□ -1.48
MSX2P35548 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX2P35548 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms